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  5. LOC_Os07g44170.1

LOC_Os07g44170.1 (EMB2758, LOC_Os07g44170)


Aliases : EMB2758, LOC_Os07g44170

Description : Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana (sp|o81767|pp348_arath : 389.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g44170.1
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
Aev_g42176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36528 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26442 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g14740 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene00209.t1 EMB2758, Aspi01Gene00209 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14535.t1 EMB2758, Aspi01Gene14535 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34758.t1 Aspi01Gene34758 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene48553.t1 Aspi01Gene48553 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene57016.t1 Aspi01Gene57016 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63595.t1 EMB2261, Aspi01Gene63595 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene67429.t1 Aspi01Gene67429 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0889.g091250 No alias not classified & original description: CDS=1-2652 0.02 OrthoFinder output from all 47 species
Cba_g05960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07168 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13662 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g60651 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g15344 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30493 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05342 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08525 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031292001 No alias Pentatricopeptide repeat-containing protein At1g56690,... 0.02 OrthoFinder output from all 47 species
Gb_10113 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.02 OrthoFinder output from all 47 species
LOC_Os05g30710.1 LOC_Os05g30710 Pentatricopeptide repeat-containing protein At1g20230... 0.02 OrthoFinder output from all 47 species
Len_g03278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05389 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05723 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06202 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12347 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g33650 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g37918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41204 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g24617 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12790 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13457 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13591 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03488 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16492 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0048.g013529 No alias ssDNA-binding protein *(OSB) & original description: CDS=539-3667 0.03 OrthoFinder output from all 47 species
Sam_g50566 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo100621 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Solyc06g005690.3.1 Solyc06g005690 Pentatricopeptide repeat-containing protein At5g59600... 0.02 OrthoFinder output from all 47 species
Tin_g30254 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e008183_P001 Zm00001e008183 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e019971_P001 Zm00001e019971 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Zm00001e029450_P001 Zm00001e029450 Pentatricopeptide repeat-containing protein At2g46050,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 527 573
IPR002885 Pentatricopeptide_repeat 324 368
IPR002885 Pentatricopeptide_repeat 429 457
IPR002885 Pentatricopeptide_repeat 299 318
IPR002885 Pentatricopeptide_repeat 121 149
IPR002885 Pentatricopeptide_repeat 227 256
IPR002885 Pentatricopeptide_repeat 601 627
IPR002885 Pentatricopeptide_repeat 199 223
IPR002885 Pentatricopeptide_repeat 94 118
No external refs found!