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  5. LOC_Os07g47780.1

LOC_Os07g47780.1 (LOC_Os07g47780)


Aliases : LOC_Os07g47780

Description : component RPL18 of LSU proteome component


Gene families : OG0001263 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001263_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g47780.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AT3G05590 RPL18 ribosomal protein L18 0.31 OrthoFinder output from all 47 species
Adi_g013370 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Adi_g064904 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Adi_g086059 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Adi_g086060 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g086061 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Adi_g090259 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Aev_g06952 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aev_g21624 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g35052 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Ala_g38600 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Als_g12967 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g13590 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Als_g30283 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g53054 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Aob_g14209 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g02367 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Aop_g11456 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Aspi01Gene54752.t1 RPL18, Aspi01Gene54752 component *(eL18) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010796 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Azfi_s0090.g042750 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.2 OrthoFinder output from all 47 species
Cba_g33700 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.09G043000.1 RPL18, Ceric.09G043000 component *(eL18) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Ceric.38G049200.1 RPL18, Ceric.38G049200 component *(eL18) of large ribosomal-subunit (LSU)... 0.27 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000142.18 RPL18 60S ribosomal protein L18 (Fragment) OS=Cicer arietinum 0.36 OrthoFinder output from all 47 species
Cre12.g512600 RPL18 Protein biosynthesis.cytosolic ribosome.large subunit... 0.34 OrthoFinder output from all 47 species
Dac_g03575 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.28 OrthoFinder output from all 47 species
Dac_g26189 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g30156 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g35257 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g41478 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Dde_g11958 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dde_g44985 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g03208 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ehy_g04305 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01028036001 RPL18 Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 OrthoFinder output from all 47 species
GSVIVT01031168001 RPL18 Protein biosynthesis.cytosolic ribosome.large subunit... 0.29 OrthoFinder output from all 47 species
GSVIVT01035120001 RPL18 Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder output from all 47 species
Gb_16720 No alias component RPL18 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Gb_21301 RPL18 component RPL18 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Len_g14018 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Lfl_g12399 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Mp1g22500.1 No alias component RPL18 of LSU proteome component 0.41 OrthoFinder output from all 47 species
Msp_g40679 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Nbi_g06518 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g27089 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g37928 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g08150 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ore_g19871 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Pir_g12785 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pir_g36266 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pir_g53472 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g61347 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c1_5330V3.1 RPL18, Pp3c1_5330 ribosomal protein L18 0.19 OrthoFinder output from all 47 species
Pp3c2_32510V3.1 RPL18, Pp3c2_32510 ribosomal protein L18 0.23 OrthoFinder output from all 47 species
Pp3c2_34080V3.1 RPL18, Pp3c2_34080 ribosomal protein L18 0.18 OrthoFinder output from all 47 species
Pp3c7_22030V3.1 RPL18, Pp3c7_22030 ribosomal protein L18 0.11 OrthoFinder output from all 47 species
Ppi_g02625 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g07819 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ppi_g27061 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ppi_g35462 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ppi_g43406 RPL18 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56097 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0076.g017487 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0175.g024575 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g06146 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Sam_g06147 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Sam_g11426 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Sam_g11427 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.29 OrthoFinder output from all 47 species
Sam_g14116 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g24421 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g35041 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Smo267976 RPL18 Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 OrthoFinder output from all 47 species
Solyc01g099900.4.1 RPL18, Solyc01g099900 component RPL18 of LSU proteome component 0.38 OrthoFinder output from all 47 species
Solyc09g075290.3.1 RPL18, Solyc09g075290 component RPL18 of LSU proteome component 0.45 OrthoFinder output from all 47 species
Spa_g19308 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Spa_g21425 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.19 OrthoFinder output from all 47 species
Spa_g43867 No alias component *(eL18) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Spa_g50566 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Tin_g19629 RPL18 component *(eL18) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Zm00001e026750_P001 Zm00001e026750 component RPL18 of LSU proteome component 0.4 OrthoFinder output from all 47 species
Zm00001e031155_P001 Zm00001e031155 component RPL18 of LSU proteome component 0.37 OrthoFinder output from all 47 species
Zm00001e035836_P001 Zm00001e035836 component RPL18 of LSU proteome component 0.41 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR021131 Ribosomal_L18e/L15P 2 195
No external refs found!