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  5. LOC_Os08g01890.1

LOC_Os08g01890.1 (LOC_Os08g01890)


Aliases : LOC_Os08g01890

Description : no description available(sp|q65xs5|bc10_orysj : 169.0)


Gene families : OG0000231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g01890.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00172530 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00036p00191120 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT4G32290 No alias Core-2/I-branching... 0.03 OrthoFinder output from all 47 species
AT5G16170 No alias Core-2/I-branching... 0.03 OrthoFinder output from all 47 species
Adi_g074776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g33624 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60447.t1 Aspi01Gene60447 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60448.t1 Aspi01Gene60448 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70120.t1 Aspi01Gene70120 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70121.t1 Aspi01Gene70121 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G008800.1 Ceric.05G008800 not classified & original description: pacid=50579184... 0.03 OrthoFinder output from all 47 species
Ceric.18G049800.1 Ceric.18G049800 not classified & original description: pacid=50621711... 0.02 OrthoFinder output from all 47 species
Ceric.20G050500.1 Ceric.20G050500 not classified & original description: pacid=50566615... 0.03 OrthoFinder output from all 47 species
Dac_g23562 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06907 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07163 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010878001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01011858001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01011861001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01034592001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01035340001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os02g22160.1 LOC_Os02g22160 no description available(sp|q65xs5|bc10_orysj : 129.0) 0.04 OrthoFinder output from all 47 species
LOC_Os12g42420.1 LOC_Os12g42420 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_112910g0020 No alias no description available(sp|q65xs5|bc10_orysj : 127.0) 0.02 OrthoFinder output from all 47 species
MA_11883g0010 No alias no description available(sp|q65xs5|bc10_orysj : 160.0) 0.03 OrthoFinder output from all 47 species
Mp8g13670.1 No alias no description available(sp|q65xs5|bc10_orysj : 104.0) 0.02 OrthoFinder output from all 47 species
Ore_g38028 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g24791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g32197 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c1_42810V3.1 Pp3c1_42810 Core-2/I-branching... 0.02 OrthoFinder output from all 47 species
Ppi_g33055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g009120.3.1 Solyc05g009120 no description available(sp|q65xs5|bc10_orysj : 165.0) 0.05 OrthoFinder output from all 47 species
Solyc07g008940.3.1 Solyc07g008940 no description available(sp|q65xs5|bc10_orysj : 186.0) 0.03 OrthoFinder output from all 47 species
Tin_g09483 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003261_P001 Zm00001e003261 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e024826_P001 Zm00001e024826 no description available(sp|q65xs5|bc10_orysj : 127.0) 0.06 OrthoFinder output from all 47 species
Zm00001e029160_P001 Zm00001e029160 no description available(sp|q65xs5|bc10_orysj : 176.0) 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR003406 Glyco_trans_14 139 366
No external refs found!