LOC_Os08g05710.1 (ABCB14, ATABCB14,...)

Aliases : ABCB14, ATABCB14, PGP14, LOC_Os08g05710

Description : subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g05710.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00109790	PGP11,...	No description available	0.04	OrthoFinder output from all 47 species
Ala_g26174	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g26381	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g33590	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g14003	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g36046	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene32170.t1	ABCB14,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g75977	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g13730	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Gb_13909	PGP2	ABC transporter B family member 2 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os01g52550.1	LOC_Os01g52550	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Len_g18141	PGP10	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g41280	PGP11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_102299g0010	No alias	Putative multidrug resistance protein OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
MA_10280832g0010	PGP11	ABC transporter B family member 7 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_10436810g0010	No alias	Putative multidrug resistance protein OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
MA_9148200g0010	No alias	ABC transporter B family member 15 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_93218g0020	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Solyc02g071350.3.1	PGP9, Solyc02g071350	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Zm00001e017444_P002	PGP21, Zm00001e017444	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Zm00001e023274_P001	PGP2, Zm00001e023274	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Zm00001e025438_P001	PGP21, Zm00001e025438	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:0043531	ADP binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	673	929
IPR011527	ABC1_TM_dom	59	187
IPR003439	ABC_transporter-like_ATP-bd	376	524
IPR003439	ABC_transporter-like_ATP-bd	1007	1156

External Links

No external refs found!

LOC_Os08g05710.1 (ABCB14, ATABCB14,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation