Aliases : ATSS3, SS3, LOC_Os08g09230
Description : starch synthase (SSIII)
Gene families : OG0000693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000693_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os08g09230.1 | |
| Cluster | HCCA: Cluster_40 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G11720 | ATSS3, SS3 | starch synthase 3 | 0.03 | OrthoFinder output from all 47 species | |
| Cre06.g282000 | ATSS3, SS3 | Carbohydrate metabolism.starch... | 0.01 | OrthoFinder output from all 47 species | |
| Cre16.g665800 | ATSS4, SS4, SSIV | Probable starch synthase 4, chloroplastic/amyloplastic... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_24148 | ATSS4, SS4, SSIV | Probable starch synthase 4, chloroplastic/amyloplastic... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g20036 | ATSS4, SS4, SSIV | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g27766 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c9_14980V3.1 | ATSS4, SS4,... | starch synthase 4 | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g39876 | ATSS4, SS4, SSIV | starch synthase *(SS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e039962_P001 | ATSS3, SS3,... | starch synthase (SSIII) | 0.07 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:2001070 | starch binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| CC | GO:0019867 | outer membrane | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
| CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
| MF | GO:0045735 | nutrient reservoir activity | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| No external refs found! |
