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  5. LOC_Os08g17870.1

LOC_Os08g17870.1 (LOC_Os08g17870)


Aliases : LOC_Os08g17870

Description : Reticulon-like protein B21 OS=Arabidopsis thaliana (sp|q56x72|rtnls_arath : 234.0)


Gene families : OG0003467 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g17870.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00202980 evm_27.TU.AmTr_v1... Reticulon-like protein B21 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G58000 No alias Reticulon family protein 0.03 OrthoFinder output from all 47 species
Aev_g16424 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g05841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g01665 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g12158 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g01586 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g30457 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01020595001 No alias Reticulon-like protein B17 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Len_g21192 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_18411g0010 No alias Reticulon-like protein B21 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Msp_g08988 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g18960 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g34406 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g43633 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g49538 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007280 No alias not classified & original description: CDS=1-1662 0.02 OrthoFinder output from all 47 species
Smo405772 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 OrthoFinder output from all 47 species
Solyc07g005470.4.1 Solyc07g005470 Reticulon-like protein B21 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc12g010120.2.1 Solyc12g010120 Reticulon-like protein B21 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e022248_P002 Zm00001e022248 Reticulon-like protein B21 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
InterPro domains Description Start Stop
IPR003388 Reticulon 333 470
No external refs found!