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  5. LOC_Os08g33530.1

LOC_Os08g33530.1 (BRC1, ATTCP18, TCP18,...)


Aliases : BRC1, ATTCP18, TCP18, LOC_Os08g33530

Description : transcription factor (TCP)


Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g33530.1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Aev_g30836 TCP10 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.27G008200.1 TCP17, Ceric.27G008200 TCP-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g18891 TCP2 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008109001 TCP5 RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
GSVIVT01021528001 ATTCP24, TCP24 RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
Gb_07891 ATTCP24, TCP24 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
MA_49143g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_78665g0010 TCP2 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Pnu_g26630 TCP2 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26727 TCP13, TFPD, PTF1 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g045030.2.1 TCP12, BRC2,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc07g053410.4.1 TCP4, MEE35,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Tin_g03446 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005407_P001 TCP12, BRC2,... transcription factor (TCP) 0.07 OrthoFinder output from all 47 species
Zm00001e009811_P001 BRC1, ATTCP18,... transcription factor (TCP) 0.08 OrthoFinder output from all 47 species
Zm00001e011911_P001 ATTCP24, TCP24,... transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Zm00001e034097_P001 BRC1, ATTCP18,... transcription factor (TCP) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 85 198
No external refs found!