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  5. LOC_Os08g35420.1

LOC_Os08g35420.1 (PSBA, LOC_Os08g35420)


Aliases : PSBA, LOC_Os08g35420

Description : component PsbA/D1 of PS-II reaction center complex


Gene families : OG0001107 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g35420.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g03797 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Aev_g33560 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Cba_g74869 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.01G066400.1 PSBA, Ceric.01G066400 not classified & original description: pacid=50590620... 0.03 OrthoFinder output from all 47 species
Ceric.02G016000.1 PSBD, Ceric.02G016000 component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.05G043300.1 PSBA, Ceric.05G043300 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.07G016000.1 PSBA, Ceric.07G016000 not classified & original description: pacid=50626123... 0.04 OrthoFinder output from all 47 species
Ceric.09G049700.1 PSBA, Ceric.09G049700 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.16G061600.1 PSBA, Ceric.16G061600 not classified & original description: pacid=50589682... 0.03 OrthoFinder output from all 47 species
Ceric.1Z020700.1 PSBA, Ceric.1Z020700 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.22G078100.1 PSBA, Ceric.22G078100 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.29G003100.1 PSBA, Ceric.29G003100 component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ceric.29G050900.1 PSBA, Ceric.29G050900 not classified & original description: pacid=50624438... 0.05 OrthoFinder output from all 47 species
Ceric.36G044800.1 PSBA, Ceric.36G044800 not classified & original description: pacid=50568302... 0.03 OrthoFinder output from all 47 species
Dcu_g24049 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Dde_g00539 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Dde_g15702 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Gb_03955 PSBA Photosystem II protein D1 OS=Cryptomeria japonica... 0.02 OrthoFinder output from all 47 species
Gb_09035 PSBA Photosystem II protein D1 OS=Cryptomeria japonica... 0.02 OrthoFinder output from all 47 species
Gb_18604 PSBA Photosystem II protein D1 OS=Adiantum capillus-veneris... 0.02 OrthoFinder output from all 47 species
Gb_20129 PSBA Photosystem II protein D1 OS=Zygnema circumcarinatum... 0.03 OrthoFinder output from all 47 species
Gb_26289 PSBA no description available(sp|q85bh5|psba_antag : 489.0) 0.03 OrthoFinder output from all 47 species
LOC_Os04g16770.1 PSBA, LOC_Os04g16770 component PsbA/D1 of PS-II reaction center complex 0.09 OrthoFinder output from all 47 species
Nbi_g06167 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ore_g00373 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ore_g12399 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g01211 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001231 PSBD not classified & original description: CDS=1-297 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002256 PSBC not classified & original description: CDS=1-531 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004175 PSBA not classified & original description: CDS=1-357 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015242 PSBA not classified & original description: CDS=1-252 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021119 PSBA not classified & original description: CDS=1-291 0.05 OrthoFinder output from all 47 species
Sam_g01382 No alias component *(PsbD/D2) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Solyc00g230080.1.1 PSBD, Solyc00g230080 Photosystem II D2 protein OS=Tupiella akineta... 0.03 OrthoFinder output from all 47 species
Solyc02g011990.1.1 PSBA, Solyc02g011990 Photosystem II protein D1 OS=Marchantia polymorpha... 0.05 OrthoFinder output from all 47 species
Tin_g12149 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e036844_P001 PSBA, Zm00001e036844 Photosystem II protein D1 OS=Zea mays... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009772 photosynthetic electron transport in photosystem II IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR000484 Photo_RC_L/M 28 327
No external refs found!