LOC_Os08g43010.1 (LOC_Os08g43010)

Aliases : LOC_Os08g43010

Description : Putative disease resistance protein RGA1 OS=Solanum bulbocastanum (sp|q7xa42|rga1_solbu : 468.0)

Gene families : OG0000694 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000694_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g43010.1

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01013533001	No alias	Putative disease resistance RPP13-like protein 1...	0.05	OrthoFinder output from all 47 species
GSVIVT01019351001	No alias	Putative disease resistance protein RGA4 OS=Solanum bulbocastanum	0.02	OrthoFinder output from all 47 species
LOC_Os01g33684.1	LOC_Os01g33684	Putative disease resistance RPP13-like protein 1...	0.04	OrthoFinder output from all 47 species
LOC_Os07g17220.1	LOC_Os07g17220	Putative disease resistance protein At3g14460...	0.07	OrthoFinder output from all 47 species
LOC_Os08g43000.1	LOC_Os08g43000	Putative disease resistance protein RGA3 OS=Solanum...	0.03	OrthoFinder output from all 47 species
LOC_Os09g14490.1	LOC_Os09g14490	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
Zm00001e031999_P001	Zm00001e031999	Putative disease resistance protein RGA3 OS=Solanum...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041118	Rx_N	9	92
IPR002182	NB-ARC	171	413

External Links

No external refs found!