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  5. LOC_Os09g04680.1

LOC_Os09g04680.1 (PSBB, LOC_Os09g04680)


Aliases : PSBB, LOC_Os09g04680

Description : Photosystem II CP47 reaction center protein OS=Oryza nivara (sp|q6ene8|psbb_oryni : 694.0)


Gene families : OG0004191 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004191_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g04680.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00585p00000100 PSBB,... Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.12 OrthoFinder output from all 47 species
ATCG00680 PSBB photosystem II reaction center protein B 0.38 OrthoFinder output from all 47 species
Adi_g005798 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Aev_g08305 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.28 OrthoFinder output from all 47 species
Als_g00826 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.11 OrthoFinder output from all 47 species
Aob_g02288 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.18 OrthoFinder output from all 47 species
Cba_g02603 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.12 OrthoFinder output from all 47 species
Ceric.02G013400.1 PSBB, Ceric.02G013400 component *(PsbB/CP47) of PS-II reaction center complex... 0.03 OrthoFinder output from all 47 species
Ceric.02G015500.1 PSBB, Ceric.02G015500 component *(PsbB/CP47) of PS-II reaction center complex... 0.07 OrthoFinder output from all 47 species
Ceric.05G041400.1 PSBB, Ceric.05G041400 component *(PsbB/CP47) of PS-II reaction center complex... 0.33 OrthoFinder output from all 47 species
Ceric.05G051100.1 PSBB, Ceric.05G051100 component *(PsbB/CP47) of PS-II reaction center complex... 0.28 OrthoFinder output from all 47 species
Ceric.14G009600.1 PSBB, Ceric.14G009600 not classified & original description: pacid=50634641... 0.07 OrthoFinder output from all 47 species
Ceric.19G038500.1 PSBB, Ceric.19G038500 not classified & original description: pacid=50576616... 0.04 OrthoFinder output from all 47 species
Ceric.1Z019400.1 PSBB, Ceric.1Z019400 component *(PsbB/CP47) of PS-II reaction center complex... 0.17 OrthoFinder output from all 47 species
Ceric.1Z021200.1 PSBB, Ceric.1Z021200 component *(PsbB/CP47) of PS-II reaction center complex... 0.19 OrthoFinder output from all 47 species
Ceric.1Z162800.1 PSBB, Ceric.1Z162800 component *(PsbB/CP47) of PS-II reaction center complex... 0.25 OrthoFinder output from all 47 species
Ceric.30G038800.1 PSBB, Ceric.30G038800 not classified & original description: pacid=50609266... 0.14 OrthoFinder output from all 47 species
Ceric.38G008000.1 PSBB, Ceric.38G008000 component *(PsbB/CP47) of PS-II reaction center complex... 0.33 OrthoFinder output from all 47 species
Dac_g09466 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Dcu_g21021 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.16 OrthoFinder output from all 47 species
Dde_g03407 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
GSVIVT01006503001 PSBB Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris 0.08 OrthoFinder output from all 47 species
Gb_23567 PSBB component PsbB/CP47 of PS-II reaction center complex 0.12 OrthoFinder output from all 47 species
Gb_27294 PSBB Photosystem II CP47 reaction center protein OS=Cycas... 0.12 OrthoFinder output from all 47 species
Gb_40206 PSBB Photosystem II CP47 reaction center protein... 0.03 OrthoFinder output from all 47 species
LOC_Os12g10600.1 PSBB, LOC_Os12g10600 Photosystem II CP47 reaction center protein OS=Oryza... 0.12 OrthoFinder output from all 47 species
Len_g02818 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Lfl_g04892 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.25 OrthoFinder output from all 47 species
Mpzg01020.1 PSBB component PsbB/CP47 of PS-II reaction center complex 0.08 OrthoFinder output from all 47 species
Msp_g21439 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species
Ore_g02100 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.16 OrthoFinder output from all 47 species
Pir_g05119 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.13 OrthoFinder output from all 47 species
Pnu_g00696 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.06 OrthoFinder output from all 47 species
Pp3c21_5650V3.1 PETB, Pp3c21_5650 photosynthetic electron transfer B 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002254 PSBB not classified & original description: CDS=1-408 0.12 OrthoFinder output from all 47 species
Sam_g10281 No alias component *(PsbB/CP47) of PS-II reaction center complex... 0.11 OrthoFinder output from all 47 species
Smo137729 PSBB Photosystem II CP47 reaction center protein OS=Angiopteris evecta 0.2 OrthoFinder output from all 47 species
Solyc00g500024.1.1 PSBB, Solyc00g500024 component PsbB/CP47 of PS-II reaction center complex 0.31 OrthoFinder output from all 47 species
Solyc00g500071.1.1 PSBB, Solyc00g500071 component PsbB/CP47 of PS-II reaction center complex 0.31 OrthoFinder output from all 47 species
Spa_g04296 PSBB component *(PsbB/CP47) of PS-II reaction center complex... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA Interproscan
BP GO:0009767 photosynthetic electron transport chain IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016168 chlorophyll binding IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 1 25
IPR000932 PS_antenna-like 23 376
No external refs found!