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  5. LOC_Os09g10230.1

LOC_Os09g10230.1 (ASK4, SK4, LOC_Os09g10230)


Aliases : ASK4, SK4, LOC_Os09g10230

Description : target protein binding component SKP1/ASK1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes


Gene families : OG0000379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000379_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g10230.1
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Aop_g55744 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
GSVIVT01021776001 ASK4, SK4 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
MA_121410g0010 ASK1, ATSKP1,... target protein binding component SKP1/ASK1 of... 0.04 OrthoFinder output from all 47 species
MA_85930g0010 ASK2, SKP1B target protein binding component SKP1/ASK1 of... 0.03 OrthoFinder output from all 47 species
Pp3c5_17130V3.1 Pp3c5_17130 SKP1-like 11 0.01 OrthoFinder output from all 47 species
Zm00001e011288_P001 ASK2, SKP1B,... target protein binding component SKP1/ASK1 of... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR016072 Skp1_comp_dimer 119 164
IPR016073 Skp1_comp_POZ 16 75
No external refs found!