1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os09g14610.1

LOC_Os09g14610.1 (ATDCL2, DCL2, LOC_Os09g14610)


Aliases : ATDCL2, DCL2, LOC_Os09g14610

Description : Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica (sp|q69lx2|dcl2b_orysj : 1376.0)


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g14610.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00127000 ATDCL3, DCL3,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 OrthoFinder output from all 47 species
Als_g22807 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Aob_g19967 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Ehy_g15817 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.01 OrthoFinder output from all 47 species
Ore_g19703 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Pir_g10968 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.01 OrthoFinder output from all 47 species
Pp3c1_24960V3.1 DCL1, CAF,... dicer-like 1 0.02 OrthoFinder output from all 47 species
Ppi_g29457 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Smo74321 DCL4, ATDCL4 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.01 OrthoFinder output from all 47 species
Solyc07g005030.4.1 DCL4, ATDCL4,... endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003100 PAZ_dom 96 229
IPR014720 dsRBD_dom 596 658
IPR000999 RNase_III_dom 461 568
IPR000999 RNase_III_dom 270 387
No external refs found!