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  5. LOC_Os09g30310.1

LOC_Os09g30310.1 (NF-YC3, LOC_Os09g30310)


Aliases : NF-YC3, LOC_Os09g30310

Description : component NF-YC of NF-Y transcription factor complex


Gene families : OG0001038 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001038_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g30310.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
Als_g09191 NF-YC2, ATHAP5B, HAP5B component *(NF-YC) of NF-Y transcription factor complex... 0.02 OrthoFinder output from all 47 species
Dac_g11845 HAP5A, NF-YC1, ATHAP5A component *(NF-YC) of NF-Y transcription factor complex... 0.02 OrthoFinder output from all 47 species
Gb_00256 HAP5A, NF-YC1, ATHAP5A component NF-YC of NF-Y transcription factor complex 0.03 OrthoFinder output from all 47 species
Len_g18819 HAP5A, NF-YC1, ATHAP5A component *(NF-YC) of NF-Y transcription factor complex... 0.02 OrthoFinder output from all 47 species
Solyc06g072040.1.1 HAP5A, NF-YC1,... component NF-YC of NF-Y transcription factor complex 0.04 OrthoFinder output from all 47 species
Zm00001e003436_P001 NF-YC2, ATHAP5B,... component NF-YC of NF-Y transcription factor complex 0.03 OrthoFinder output from all 47 species
Zm00001e024345_P001 NF-YC3, Zm00001e024345 component NF-YC of NF-Y transcription factor complex 0.04 OrthoFinder output from all 47 species
Zm00001e034481_P001 NF-YC3, Zm00001e034481 component NF-YC of NF-Y transcription factor complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019211 phosphatase activator activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 81 144
No external refs found!