Aliases : LOC_Os09g39500
Description : component RPL40 of LSU proteome component
Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00017p00094950 | UBQ6,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.13 | OrthoFinder output from all 47 species | |
| AMTR_s00040p00104050 | evm_27.TU.AmTr_v1... | Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00095p00146440 | UBQ6,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00101p00053450 | evm_27.TU.AmTr_v1... | Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| AT1G23410 | No alias | Ribosomal protein S27a / Ubiquitin family protein | 0.04 | OrthoFinder output from all 47 species | |
| AT2G36170 | No alias | Ubiquitin supergroup;Ribosomal protein L40e | 0.17 | OrthoFinder output from all 47 species | |
| AT2G47110 | UBQ6 | ubiquitin 6 | 0.2 | OrthoFinder output from all 47 species | |
| AT3G52590 | UBQ1, EMB2167,... | ubiquitin extension protein 1 | 0.21 | OrthoFinder output from all 47 species | |
| AT3G62250 | UBQ5 | ubiquitin 5 | 0.23 | OrthoFinder output from all 47 species | |
| Adi_g113781 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g125802 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g22856 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.1 | OrthoFinder output from all 47 species | |
| Ala_g31252 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Als_g04717 | RUB1, ATRUB1, NEDD8 | RUB ubiquitin-fold protein & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g18351 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g28227 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g56150 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g27421 | RUB1, ATRUB1, NEDD8 | RUB ubiquitin-fold protein & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g27649 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g12224 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g20387 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g30723 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.09 | OrthoFinder output from all 47 species | |
| Aop_g48963 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g64104 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.08 | OrthoFinder output from all 47 species | |
| Aspi01Gene09565.t1 | UBQ6, Aspi01Gene09565 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene54450.t1 | Aspi01Gene54450 | component *(eL40) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g23546 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g45568 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.08G035500.1 | Ceric.08G035500 | component *(eL40) of large ribosomal-subunit (LSU)... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.21G057000.1 | UBQ6, Ceric.21G057000 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.21G057400.1 | UBQ6, Ceric.21G057400 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.14 | OrthoFinder output from all 47 species | |
| Ceric.22G050200.1 | UBQ6, Ceric.22G050200 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.27G040600.1 | Ceric.27G040600 | component *(eL40) of large ribosomal-subunit (LSU)... | 0.16 | OrthoFinder output from all 47 species | |
| Ceric.31G024800.1 | UBQ6, Ceric.31G024800 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00022075.50 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.08 | OrthoFinder output from all 47 species | |
| Cre01.g007051 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.11 | OrthoFinder output from all 47 species | |
| Cre06.g273600 | UBQ6 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.21 | OrthoFinder output from all 47 species | |
| Dac_g08496 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Dac_g17740 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g26143 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.11 | OrthoFinder output from all 47 species | |
| Dcu_g38726 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.09 | OrthoFinder output from all 47 species | |
| Dde_g47576 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01012906001 | No alias | Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana | 0.09 | OrthoFinder output from all 47 species | |
| GSVIVT01022543001 | No alias | Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01028198001 | No alias | Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01033876001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.09 | OrthoFinder output from all 47 species | |
| GSVIVT01038617001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.17 | OrthoFinder output from all 47 species | |
| Gb_01257 | No alias | component RPL40 of LSU proteome component | 0.07 | OrthoFinder output from all 47 species | |
| Gb_15027 | UBQ6 | component RPS27a of SSU proteome | 0.12 | OrthoFinder output from all 47 species | |
| Gb_40288 | UBQ6 | component RPS27a of SSU proteome | 0.14 | OrthoFinder output from all 47 species | |
| Gb_41257 | No alias | component RPL40 of LSU proteome component | 0.13 | OrthoFinder output from all 47 species | |
| Len_g14648 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g14650 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g27536 | UBQ14 | UBQ ubiquitin-fold protein & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g41265 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g04446 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g10245 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g15041 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g16121 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g16683 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g22645 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g23365 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10435699g0020 | UBQ6 | component RPS27a of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
| MA_13101g0020 | No alias | component RPL40 of LSU proteome component | 0.09 | OrthoFinder output from all 47 species | |
| MA_529552g0010 | UBQ6 | component RPS27a of SSU proteome | 0.14 | OrthoFinder output from all 47 species | |
| Mp7g12760.1 | UBQ6 | component RPS27a of SSU proteome | 0.09 | OrthoFinder output from all 47 species | |
| Mp8g00780.1 | No alias | component RPL40 of LSU proteome component | 0.18 | OrthoFinder output from all 47 species | |
| Msp_g06697 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g24177 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g27896 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Msp_g34148 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Msp_g35305 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g38968 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Nbi_g16243 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g36854 | UBQ11 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g08617 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g35714 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pp3c10_25270V3.1 | Pp3c10_25270 | ubiquitin extension protein 1 | 0.17 | OrthoFinder output from all 47 species | |
| Pp3c12_5640V3.1 | UBQ6, Pp3c12_5640 | ubiquitin 6 | 0.09 | OrthoFinder output from all 47 species | |
| Pp3c12_5760V3.1 | UBQ6, Pp3c12_5760 | ubiquitin 6 | 0.14 | OrthoFinder output from all 47 species | |
| Pp3c20_23170V3.1 | Pp3c20_23170 | ubiquitin extension protein 1 | 0.12 | OrthoFinder output from all 47 species | |
| Pp3c24_430V3.1 | Pp3c24_430 | ubiquitin extension protein 1 | 0.12 | OrthoFinder output from all 47 species | |
| Pp3c4_19000V3.1 | UBQ6, Pp3c4_19000 | ubiquitin 6 | 0.09 | OrthoFinder output from all 47 species | |
| Pp3c8_14230V3.1 | UBQ6, Pp3c8_14230 | ubiquitin 6 | 0.11 | OrthoFinder output from all 47 species | |
| Ppi_g41403 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0055.g014510 | UBQ6 | not classified & original description: CDS=1-258 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g07359 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.08 | OrthoFinder output from all 47 species | |
| Sam_g07360 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.17 | OrthoFinder output from all 47 species | |
| Sam_g07364 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g20114 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g26881 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g44136 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Smo111605 | UBQ6 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.06 | OrthoFinder output from all 47 species | |
| Smo93613 | RUB1, ATRUB1, NEDD8 | Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g068045.1.1 | UBQ6, Solyc01g068045 | component RPS27a of SSU proteome | 0.19 | OrthoFinder output from all 47 species | |
| Solyc03g082570.4.1 | Solyc03g082570 | component RPL40 of LSU proteome component | 0.22 | OrthoFinder output from all 47 species | |
| Solyc08g008590.4.1 | Solyc08g008590 | component RPL40 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
| Solyc08g083120.3.1 | Solyc08g083120 | component RPL40 of LSU proteome component | 0.22 | OrthoFinder output from all 47 species | |
| Solyc12g098940.2.1 | UBQ6, Solyc12g098940 | component RPS27a of SSU proteome | 0.16 | OrthoFinder output from all 47 species | |
| Solyc12g099025.1.1 | UBQ6, Solyc12g099025 | component RPS27a of SSU proteome | 0.24 | OrthoFinder output from all 47 species | |
| Spa_g02055 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.1 | OrthoFinder output from all 47 species | |
| Spa_g29603 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.19 | OrthoFinder output from all 47 species | |
| Spa_g29979 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.13 | OrthoFinder output from all 47 species | |
| Spa_g43571 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
| Spa_g56402 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g28918 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e000962_P001 | Zm00001e000962 | component RPL40 of LSU proteome component | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e009474_P001 | Zm00001e009474 | component RPL40 of LSU proteome component | 0.14 | OrthoFinder output from all 47 species | |
| Zm00001e026237_P001 | UBQ6, Zm00001e026237 | component RPS27a of SSU proteome | 0.2 | OrthoFinder output from all 47 species | |
| Zm00001e028916_P001 | UBQ6, Zm00001e028916 | component RPS27a of SSU proteome | 0.09 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| BP | GO:0006412 | translation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| No external refs found! |
