LOC_Os10g27174.1 (LOC_Os10g27174)

Aliases : LOC_Os10g27174

Description : component RPS28 of SSU proteome

Gene families : OG0006085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006085_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os10g27174.1
Cluster	HCCA: Cluster_14

Target	Alias	Description	ECC score	Gene Family Method
AT3G10090	No alias	Nucleic acid-binding, OB-fold-like protein	0.14	OrthoFinder output from all 47 species
AT5G03850	No alias	Nucleic acid-binding, OB-fold-like protein	0.22	OrthoFinder output from all 47 species
AT5G64140	RPS28	ribosomal protein S28	0.26	OrthoFinder output from all 47 species
Azfi_s0028.g023939	No alias	component *(eS28) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0280.g062329	No alias	component *(eS28) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.01G107900.1	Ceric.01G107900	component *(eS28) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cre12.g510450	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
MA_10206328g0010	RPS28	component RPS28 of SSU proteome	0.02	OrthoFinder output from all 47 species
MA_550900g0010	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Mp3g15160.1	No alias	component RPS28 of SSU proteome	0.11	OrthoFinder output from all 47 species
Pp3c14_19610V3.1	Pp3c14_19610	Nucleic acid-binding, OB-fold-like protein	0.06	OrthoFinder output from all 47 species
Pp3c1_28770V3.1	Pp3c1_28770	Nucleic acid-binding, OB-fold-like protein	0.03	OrthoFinder output from all 47 species
Pp3c5_6000V3.1	Pp3c5_6000	Nucleic acid-binding, OB-fold-like protein	0.07	OrthoFinder output from all 47 species
Pp3c6_27040V3.1	Pp3c6_27040	Nucleic acid-binding, OB-fold-like protein	0.02	OrthoFinder output from all 47 species
Smo170205	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Solyc02g021400.2.1	RPS28, Solyc02g021400	component RPS28 of SSU proteome	0.2	OrthoFinder output from all 47 species
Solyc10g078630.2.1	RPS28, Solyc10g078630	component RPS28 of SSU proteome	0.16	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000289	Ribosomal_S28e	4	64

External Links

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LOC_Os10g27174.1 (LOC_Os10g27174)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation