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  5. LOC_Os10g28080.1

LOC_Os10g28080.1 (LOC_Os10g28080)


Aliases : LOC_Os10g28080

Description : no description available(sp|q9slp4|chit1_tulsb : 266.0)


Gene families : OG0000380 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000380_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g28080.1
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00271140 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AMTR_s00023p00192080 evm_27.TU.AmTr_v1... Chitinase 1 OS=Tulipa bakeri 0.05 OrthoFinder output from all 47 species
Adi_g049053 No alias 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g049054 No alias 2S globulin seed storage protein & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g051500 No alias 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060075 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082491 No alias 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g03907 No alias 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g30349 No alias 2S globulin seed storage protein & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g30357 No alias 2S globulin seed storage protein & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g33127 No alias 2S globulin seed storage protein & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36197 No alias 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07604 No alias 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02791 No alias 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g21301 No alias 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g38143 No alias 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01958.t1 Aspi01Gene01958 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene27606.t1 Aspi01Gene27606 2S globulin seed storage protein & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene68849.t1 Aspi01Gene68849 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68850.t1 Aspi01Gene68850 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68852.t1 Aspi01Gene68852 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0431.g069367 No alias 2S globulin seed storage protein & original description:... 0.02 OrthoFinder output from all 47 species
Cba_g09475 No alias 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g30731 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G066400.1 Ceric.14G066400 2S globulin seed storage protein & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.1Z042900.1 Ceric.1Z042900 2S globulin seed storage protein & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.1Z043200.1 Ceric.1Z043200 2S globulin seed storage protein & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g09810 No alias 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g28835 No alias 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g34761 No alias 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g36690 No alias 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g29297 No alias 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47659 No alias 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14449 No alias 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Gb_07285 No alias no description available(sp|q7m443|chit2_tulsb : 215.0) 0.03 OrthoFinder output from all 47 species
Gb_07286 No alias no description available(sp|q9slp4|chit1_tulsb : 171.0) 0.05 OrthoFinder output from all 47 species
LOC_Os01g57390.1 LOC_Os01g57390 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os01g57400.1 LOC_Os01g57400 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g45829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g46226 No alias 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Len_g50581 No alias 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Len_g51292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10427109g0010 No alias no description available(sp|q7m443|chit2_tulsb : 356.0) 0.02 OrthoFinder output from all 47 species
Msp_g12684 No alias 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06939 No alias 2S globulin seed storage protein & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g15826 No alias 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03759 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61907 No alias 2S globulin seed storage protein & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g054700.3.1 Solyc07g054700 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g05409 No alias 2S globulin seed storage protein & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g46052 No alias 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53739 No alias 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g37745 No alias 2S globulin seed storage protein & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004770_P001 Zm00001e004770 no description available(sp|q7m443|chit2_tulsb : 315.0) 0.05 OrthoFinder output from all 47 species
Zm00001e021310_P001 Zm00001e021310 no description available(sp|q7m443|chit2_tulsb : 281.0) 0.04 OrthoFinder output from all 47 species
Zm00001e028945_P001 Zm00001e028945 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008061 chitin binding IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001223 Glyco_hydro18_cat 33 207
No external refs found!