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  5. LOC_Os10g33940.1

LOC_Os10g33940.1 (ARF16, LOC_Os10g33940)


Aliases : ARF16, LOC_Os10g33940

Description : transcription factor (ARF)


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g33940.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00157690 ARF6,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AMTR_s00036p00215270 ARF21,... Auxin response factor 7 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
AMTR_s00044p00116500 ARF1,... Auxin response factor 7 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
AMTR_s00211p00025860 MP, IAA24, ARF5,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.03 OrthoFinder output from all 47 species
AT1G34170 ARF13 AUXIN RESPONSE FACTOR 13 0.03 OrthoFinder output from all 47 species
AT1G34310 ARF12 auxin response factor 12 0.04 OrthoFinder output from all 47 species
AT1G34410 ARF21 auxin response factor 21 0.04 OrthoFinder output from all 47 species
AT1G35240 ARF20 auxin response factor 20 0.03 OrthoFinder output from all 47 species
AT1G35520 ARF15 auxin response factor 15 0.03 OrthoFinder output from all 47 species
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.03 OrthoFinder output from all 47 species
AT5G20730 TIR5, MSG1,... Transcriptional factor B3 family protein /... 0.03 OrthoFinder output from all 47 species
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.05 OrthoFinder output from all 47 species
Adi_g059116 ARF6 transcriptional repressor *(IAA/AUX) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g061151 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g068596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g080414 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107312 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06038 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g26950 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02130 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11834 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11014 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14726 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32218 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22075 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g24155 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27918 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11714.t1 ARF6, Aspi01Gene11714 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene61150.t1 ARF16, Aspi01Gene61150 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0005.g009155 ARF6 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0013.g013413 ARF10 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026103 ARF6 ARF-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.02 OrthoFinder output from all 47 species
Azfi_s0099.g044147 ARF16 ARF-type transcription factor & original description: CDS=1-2757 0.03 OrthoFinder output from all 47 species
Azfi_s0129.g048848 ARF6 ARF-type transcription factor & original description: CDS=56-2815 0.04 OrthoFinder output from all 47 species
Azfi_s0433.g069577 ARF6 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.18G034300.1 ARF16, Ceric.18G034300 ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.21G089900.1 HSS, ARF1-BP,... ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G022300.1 ARF6, Ceric.30G022300 ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.32G056500.1 ARF16, Ceric.32G056500 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g07132 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11626 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07020 ARF10 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08681 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09257 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20778 ARF14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g22354 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g30682 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025159001 ARF4 RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01035204001 ARF8, ATARF8 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
GSVIVT01035205001 ARF8, ATARF8 Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
GSVIVT01037136001 ARF1 RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
Gb_32864 ARF6 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os01g13520.1 ARF11, LOC_Os01g13520 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
LOC_Os04g56850.1 MP, IAA24, ARF5,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Len_g01404 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g08347 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g11557 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g14660 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g20412 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g28161 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_10432528g0010 ARF4 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
MA_127981g0010 ARF4 Auxin response factor 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp1g07070.1 ARF10 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Msp_g13825 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15236 ARF1 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31549 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13886 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41869 ARF17 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g50454 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g25925 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31022 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010740 TIR5, MSG1,... ARF-type transcription factor & original description: CDS=1-2400 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018261 TIR5, MSG1,... not classified & original description: CDS=484-2670 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0090.g018749 ARF10 not classified & original description: CDS=44-817 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022838 ARF1 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sam_g04406 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28812 No alias ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo115320 ARF6 Auxin response factor 25 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Solyc01g096070.3.1 ARF9, Solyc01g096070 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Solyc07g042260.4.1 ARF19, IAA22,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc08g082630.3.1 ARF9, Solyc08g082630 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Solyc10g086130.3.1 ARF16, Solyc10g086130 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc11g069190.2.1 ARF4, Solyc11g069190 transcription factor (ARF) 0.06 OrthoFinder output from all 47 species
Spa_g29254 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47786 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g55179 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27871 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003229_P002 ARF6, Zm00001e003229 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e012670_P001 ARF16, Zm00001e012670 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e013061_P001 ARF16, Zm00001e013061 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e016366_P002 ARF11, Zm00001e016366 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 288 371
IPR003340 B3_DNA-bd 128 229
No external refs found!