LOC_Os10g34990.1 (LOC_Os10g34990)

Aliases : LOC_Os10g34990

Description : component RPS27a of SSU proteome

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os10g34990.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G11980	RUB3	ubiquitin-related protein 3	0.01	OrthoFinder output from all 47 species
AT1G23410	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.02	OrthoFinder output from all 47 species
Als_g28227	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g45146	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene57838.t1	UBQ10, Aspi01Gene57838	UBQ ubiquitin-fold protein & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g79076	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g43673	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.01	OrthoFinder output from all 47 species
Dde_g13903	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g39498	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os08g08760.1	LOC_Os08g08760	Polyubiquitin 3 OS=Oryza sativa subsp. japonica...	0.01	OrthoFinder output from all 47 species
LOC_Os09g31031.1	LOC_Os09g31031	Ubiquitin-40S ribosomal protein S27a OS=Solanum...	0.03	OrthoFinder output from all 47 species
Len_g53321	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g08072	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g30561	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g32077	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g38543	UBQ4	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g66663	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Tin_g26605	UBQ11	UBQ ubiquiTin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g40776	UBQ14	UBQ ubiquiTin-fold protein & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g46317	UBQ11	UBQ ubiquiTin-fold protein & original description: none	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002906	Ribosomal_S27a	110	147
IPR000626	Ubiquitin-like_dom	8	77

External Links

No external refs found!

LOC_Os10g34990.1 (LOC_Os10g34990)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation