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  5. LOC_Os10g41100.1

LOC_Os10g41100.1 (ATCOL5, COL5, LOC_Os10g41100)


Aliases : ATCOL5, COL5, LOC_Os10g41100

Description : Transcription factor GHD7 OS=Oryza sativa subsp. japonica (sp|e5rqa1|ghd7_orysj : 92.0)


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g41100.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00262710 COL2, ATCOL2,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AMTR_s00111p00022140 ATCOL5, COL5,... No description available 0.03 OrthoFinder output from all 47 species
AT3G02380 COL2, ATCOL2 CONSTANS-like 2 0.05 OrthoFinder output from all 47 species
AT5G15850 COL1, ATCOL1 CONSTANS-like 1 0.06 OrthoFinder output from all 47 species
AT5G24930 ATCOL4, COL4 CONSTANS-like 4 0.05 OrthoFinder output from all 47 species
Adi_g024051 COL2, ATCOL2 floral promoter *(CONSTANS) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g089045 COL3, ATCOL3 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04849 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g13330 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g17369 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19112 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31427.t1 ATCOL4, COL4,... floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g009656 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: CDS=186-1232 0.05 OrthoFinder output from all 47 species
Ceric.04G058700.1 ATCOL4, COL4,... floral promoter *(CONSTANS) & original description:... 0.02 OrthoFinder output from all 47 species
Cre12.g534100 COL2, ATCOL2 No description available 0.01 OrthoFinder output from all 47 species
Ehy_g03545 COL3, ATCOL3 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01029107001 ATCOL5, COL5 Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01036037001 ATCOL4, COL4 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
GSVIVT01036499001 COL2, ATCOL2 RNA biosynthesis.transcriptional activation.C2C2... 0.06 OrthoFinder output from all 47 species
Gb_41704 ATCOL4, COL4 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Len_g00571 COL2, ATCOL2 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17115 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05304 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.08 OrthoFinder output from all 47 species
Lfl_g08431 COL2, ATCOL2 floral promoter *(CONSTANS) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g38065 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
MA_7292g0010 ATCOL4, COL4 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Ore_g20271 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34612 ATCOL4, COL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01582 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g10567 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g48282 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g002977 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: CDS=1-1206 0.02 OrthoFinder output from all 47 species
Sam_g06078 No alias floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26599 No alias floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Smo185898 ATCOL4, COL4 RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
Solyc02g089520.2.1 COL2, ATCOL2,... transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Zm00001e002319_P001 ATCOL4, COL4,... Transcription factor GHD7 OS=Oryza sativa subsp.... 0.08 OrthoFinder output from all 47 species
Zm00001e007691_P001 Zm00001e007691 transcription factor (BBX-CO) 0.1 OrthoFinder output from all 47 species
Zm00001e013804_P001 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e037706_P002 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e037873_P001 ATCOL4, COL4,... no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Zm00001e041152_P001 ATCOL5, COL5,... transcription factor (BBX-CO) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 222 263
No external refs found!