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  5. LOC_Os10g41550.1

LOC_Os10g41550.1 (BMY8, BAM3, CT-BMY,...)


Aliases : BMY8, BAM3, CT-BMY, LOC_Os10g41550

Description : beta amylase


Gene families : OG0000477 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000477_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g41550.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00150440 BMY8, BAM3,... Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
AMTR_s00050p00205080 BAM1, BMY7,... Carbohydrate metabolism.starch... 0.04 OrthoFinder output from all 47 species
AMTR_s00098p00153370 RAM1, BMY1,... Carbohydrate metabolism.starch... 0.02 OrthoFinder output from all 47 species
AT4G17090 BMY8, BAM3, CT-BMY chloroplast beta-amylase 0.03 OrthoFinder output from all 47 species
Als_g05070 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.07 OrthoFinder output from all 47 species
Als_g05689 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06607 BMY8, BAM3, CT-BMY EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18488 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20028 BMY5, BAM6 EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g47527 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03563 BMY8, BAM3, CT-BMY EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g15788 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12183.t1 BMY5, BAM6,... EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25032.t1 BAM1, BMY7,... EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44603.t1 BMY5, BAM6,... EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0319.g064428 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: CDS=328-2121 0.03 OrthoFinder output from all 47 species
Ceric.19G057400.1 BAM1, BMY7,... EC_3.2 glycosylase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g10032 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13700 BMY8, BAM3, CT-BMY EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g27805 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02901 BMY5, BAM6 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05980 BMY8, BAM3, CT-BMY EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09882 BAM4, BMY6 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17119 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017808001 BAM9, BMY3 Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
Gb_28692 BAM1, BMY7, TR-BAMY beta amylase 0.02 OrthoFinder output from all 47 species
Len_g08375 BMY8, BAM3, CT-BMY EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Len_g20100 BMY8, BAM3, CT-BMY EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g22613 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30972 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13123 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g16042 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16580 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09045 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22861 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0087.g018480 BAM1, BMY7, TR-BAMY EC_3.2 glycosylase & original description: CDS=293-2071 0.03 OrthoFinder output from all 47 species
Smo232533 BAM1, BMY7, TR-BAMY Carbohydrate metabolism.starch... 0.04 OrthoFinder output from all 47 species
Solyc01g067660.3.1 BAM9, BMY3,... beta amylase 0.04 OrthoFinder output from all 47 species
Spa_g14984 BMY8, BAM3, CT-BMY EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e037830_P001 BMY8, BAM3,... beta amylase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEA Interproscan
MF GO:0016161 beta-amylase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001554 Glyco_hydro_14 85 499
No external refs found!