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  5. LOC_Os11g08330.1

LOC_Os11g08330.1 (EMB2780, LOC_Os11g08330)


Aliases : EMB2780, LOC_Os11g08330

Description : component POLD1 of DNA polymerase delta complex


Gene families : OG0002006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g08330.1
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AT5G63960 EMB2780 DNA binding;nucleotide binding;nucleic acid... 0.12 OrthoFinder output from all 47 species
Adi_g020465 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Aop_g09717 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000975 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species
Azfi_s0008.g011315 ATREV3, REV3 not classified & original description: CDS=841-2013 0.02 OrthoFinder output from all 47 species
Cba_g02107 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Ceric.29G084300.1 EMB2780, Ceric.29G084300 EC_2.7 transferase transferring phosphorus-containing... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001545.7 EMB2780 Cell cycle.interphase.DNA replication.elongation.DNA... 0.07 OrthoFinder output from all 47 species
Cre01.g015250 EMB2780 Cell cycle.interphase.DNA replication.elongation.DNA... 0.07 OrthoFinder output from all 47 species
Dac_g01043 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Dcu_g13997 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
GSVIVT01026455001 EMB2780 Cell cycle.interphase.DNA replication.elongation.DNA... 0.03 OrthoFinder output from all 47 species
Gb_15178 EMB2780 DNA polymerase delta catalytic subunit OS=Glycine max... 0.03 OrthoFinder output from all 47 species
Gb_15179 EMB2780 DNA polymerase delta catalytic subunit OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Gb_15180 EMB2780 component POLD1 of DNA polymerase delta complex 0.03 OrthoFinder output from all 47 species
MA_36703g0010 EMB2780 component POLD1 of DNA polymerase delta complex 0.08 OrthoFinder output from all 47 species
Mp4g05690.1 EMB2780 component POLD1 of DNA polymerase delta complex 0.05 OrthoFinder output from all 47 species
Solyc10g081250.3.1 EMB2780, Solyc10g081250 component POLD1 of DNA polymerase delta complex 0.06 OrthoFinder output from all 47 species
Zm00001e024553_P001 EMB2780, Zm00001e024553 component POLD1 of DNA polymerase delta complex 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032780 negative regulation of ATP-dependent activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
CC GO:0042555 MCM complex IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043462 regulation of ATP-dependent activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051095 regulation of helicase activity IEP HCCA
BP GO:0051097 negative regulation of helicase activity IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1905462 regulation of DNA duplex unwinding IEP HCCA
BP GO:1905463 negative regulation of DNA duplex unwinding IEP HCCA
BP GO:1905774 regulation of DNA helicase activity IEP HCCA
BP GO:1905775 negative regulation of DNA helicase activity IEP HCCA
BP GO:2001251 negative regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR006133 DNA-dir_DNA_pol_B_exonuc 138 481
IPR025687 Znf-C4pol 1015 1086
IPR006134 DNA-dir_DNA_pol_B_multi_dom 545 978
No external refs found!