Aliases : LOC_Os11g20554
Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 OS=Arabidopsis thaliana (sp|q93y16|deah4_arath : 977.0)
Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00021p00166450 | evm_27.TU.AmTr_v1... | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00090p00083520 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.spliceosome... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G26370 | No alias | RNA helicase family protein | 0.07 | OrthoFinder output from all 47 species | |
| AT1G27900 | No alias | RNA helicase family protein | 0.04 | OrthoFinder output from all 47 species | |
| AT2G35340 | MEE29 | helicase domain-containing protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g060167 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g078789 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g084485 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g107993 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g11422 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g38553 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g01190 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g01897 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g04491 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g11041 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g23007 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g01347 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g13922 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g15706 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g69620 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0008.g011394 | No alias | RNA helicase *(Prp22) & original description: CDS=292-2379 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g07013 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g13014 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g33796 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G078700.1 | Ceric.04G078700 | not classified & original description: pacid=50630845... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.15G036900.1 | Ceric.15G036900 | RNA helicase *(Prp22) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.25G032700.1 | Ceric.25G032700 | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.34G065000.1 | Ceric.34G065000 | not classified & original description: pacid=50623415... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.37G064800.1 | ESP3, EMB2733,... | RNA helicase *(Prp2) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000796.23 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00021589.28 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.01 | OrthoFinder output from all 47 species | |
| Cre06.g266383 | No alias | No description available | 0.01 | OrthoFinder output from all 47 species | |
| Cre07.g349100 | ESP3, EMB2733 | RNA processing.RNA splicing.spliceosome... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g11433 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g01861 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g20664 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g22478 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g42294 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g07449 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g08449 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g48013 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g14594 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01007911001 | ESP3, EMB2733 | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01021163001 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_11931 | No alias | RNA helicase (Prp22) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g08915 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g09738 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g31554 | No alias | RNA helicase *(Prp22) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10428112g0030 | FAS4, ATFAS4 | ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| MA_4084g0010 | HVT1, ATVT-1 | DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Mp1g21130.1 | No alias | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.02 | OrthoFinder output from all 47 species | |
| Mp3g17320.1 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder output from all 47 species | |
| Mp4g02780.1 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
| Mp4g16380.1 | ESP3, EMB2733 | RNA helicase (Prp2) | 0.02 | OrthoFinder output from all 47 species | |
| Mp7g03460.1 | EMB3011 | RNA helicase (Prp16) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g14081 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g32552 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g03086 | No alias | RNA helicase *(Prp22) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g12800 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g21732 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g30533 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g42980 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g42990 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g15013 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g18506 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g06275 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g16290 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g16823 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g25079 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g29503 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g48742 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
| Smo76120 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g115390.4.1 | ESP3, EMB2733,... | RNA helicase (Prp2) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc05g015040.4.1 | Solyc05g015040 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc07g039550.4.1 | Solyc07g039550 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g008120.4.1 | Solyc09g008120 | RNA helicase (Prp22) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g097820.3.1 | Solyc09g097820 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g07103 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g17882 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e001487_P003 | Zm00001e001487 | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e014112_P001 | Zm00001e014112 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e016478_P002 | Zm00001e016478 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.08 | OrthoFinder output from all 47 species | |
| Zm00001e038305_P001 | Zm00001e038305 | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0004386 | helicase activity | IEA | Interproscan |
| MF | GO:0005524 | ATP binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | HCCA |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | HCCA |
| CC | GO:0000176 | nuclear exosome (RNase complex) | IEP | HCCA |
| CC | GO:0000178 | exosome (RNase complex) | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004527 | exonuclease activity | IEP | HCCA |
| MF | GO:0005216 | monoatomic ion channel activity | IEP | HCCA |
| CC | GO:0005680 | anaphase-promoting complex | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006298 | mismatch repair | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0007346 | regulation of mitotic cell cycle | IEP | HCCA |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0010564 | regulation of cell cycle process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0030071 | regulation of mitotic metaphase/anaphase transition | IEP | HCCA |
| MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0033043 | regulation of organelle organization | IEP | HCCA |
| BP | GO:0033044 | regulation of chromosome organization | IEP | HCCA |
| BP | GO:0033045 | regulation of sister chromatid segregation | IEP | HCCA |
| MF | GO:0034061 | DNA polymerase activity | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0051128 | regulation of cellular component organization | IEP | HCCA |
| BP | GO:0051726 | regulation of cell cycle | IEP | HCCA |
| BP | GO:0051983 | regulation of chromosome segregation | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| BP | GO:1901987 | regulation of cell cycle phase transition | IEP | HCCA |
| BP | GO:1901990 | regulation of mitotic cell cycle phase transition | IEP | HCCA |
| BP | GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| CC | GO:1905354 | exoribonuclease complex | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| No external refs found! |
