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  5. LOC_Os11g37230.1

LOC_Os11g37230.1 (LOC_Os11g37230)


Aliases : LOC_Os11g37230

Description : no hits & (original description: none)


Gene families : OG0000957 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000957_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g37230.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272380 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Adi_g024796 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g19306 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06279 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g22504 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g57980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63256 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g19898 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene69535.t1 Aspi01Gene69535 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0212.g058186 No alias not classified & original description: CDS=102-653 0.02 OrthoFinder output from all 47 species
Azfi_s0436.g069942 No alias not classified & original description: CDS=1-840 0.03 OrthoFinder output from all 47 species
Ceric.22G025500.1 Ceric.22G025500 not classified & original description: pacid=50615262... 0.03 OrthoFinder output from all 47 species
Dcu_g37768 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g45444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23469 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26254 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037874001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_19820 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_25302 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os02g55480.1 LOC_Os02g55480 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os03g10890.1 LOC_Os03g10890 Probable E3 ubiquitin-protein ligase RHY1A... 0.05 OrthoFinder output from all 47 species
Len_g15338 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10426524g0010 No alias Probable E3 ubiquitin-protein ligase RHY1A... 0.04 OrthoFinder output from all 47 species
Msp_g27907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g07226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16624 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g30129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10810 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g107290.3.1 Solyc01g107290 Probable E3 ubiquitin-protein ligase RHY1A... 0.04 OrthoFinder output from all 47 species
Solyc07g007170.3.1 Solyc07g007170 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 150 193
No external refs found!