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  5. LOC_Os11g40100.3

LOC_Os11g40100.3 (GIF3, LOC_Os11g40100)


Aliases : GIF3, LOC_Os11g40100

Description : cofactor component GIF of GRF-GIF transcriptional complex


Gene families : OG0001681 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001681_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os11g40100.3

Target Alias Description ECC score Gene Family Method Actions
Aop_g01054 GIF1, GIF, ATGIF1, AN3 cofactor component *(GIF) of GRF-GIF transcriptional... 0.03 OrthoFinder output from all 47 species
GSVIVT01027418001 GIF3 RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010830 GIF3 cofactor component *(GIF) of GRF-GIF transcriptional... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013119 GIF3 cofactor component *(GIF) of GRF-GIF transcriptional... 0.02 OrthoFinder output from all 47 species
Sam_g06464 No alias cofactor component *(GIF) of GRF-GIF transcriptional... 0.02 OrthoFinder output from all 47 species
Solyc03g082480.4.1 GIF3, Solyc03g082480 cofactor component GIF of GRF-GIF transcriptional complex 0.07 OrthoFinder output from all 47 species
Zm00001e018335_P001 GIF3, Zm00001e018335 cofactor component GIF of GRF-GIF transcriptional complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003713 transcription coactivator activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR007726 SS18_N 22 75
No external refs found!