1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g03594.1

LOC_Os12g03594.1 (AtPP2-B10, PP2-B10,...)


Aliases : AtPP2-B10, PP2-B10, LOC_Os12g03594

Description : F-box protein PP2-B10 OS=Arabidopsis thaliana (sp|q9zvq6|p2b10_arath : 201.0)


Gene families : OG0000279 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000279_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g03594.1
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AT1G56250 PP2-B14, AtPP2-B14 phloem protein 2-B14 0.03 OrthoFinder output from all 47 species
AT5G24560 AtPP2-B12, PP2-B12 phloem protein 2-B12 0.03 OrthoFinder output from all 47 species
Aspi01Gene14101.t1 PP2-A15,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene55189.t1 Aspi01Gene55189 not classified & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os02g56800.1 AtPP2-B2,... Putative F-box protein PP2-B2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os12g03740.1 AtPP2-B10,... F-box protein PP2-B10 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_10430103g0010 AtPP2-B10, PP2-B10 F-box protein PP2-B1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_5038g0010 ATPP2-B11, PP2-B11 F-box protein PP2-B11 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Pir_g26057 AtPP2-B1, PP2-B1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g00534 AtPP2-B8, PP2-B8 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g18431 AtPP2-B10, PP2-B10 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g12339 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g41732 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g100010.3.1 PP2-B15,... F-box protein PP2-B15 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc04g056680.2.1 AtPP2-B10,... F-box protein PP2-B10 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e024648_P001 AtPP2-B2,... Putative F-box protein PP2-B2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025886 PP2-like 188 370
No external refs found!