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  5. LOC_Os12g06070.1

LOC_Os12g06070.1 (LOC_Os12g06070)


Aliases : LOC_Os12g06070

Description : Pentatricopeptide repeat-containing protein At5g04780, mitochondrial OS=Arabidopsis thaliana (sp|q9lz19|pp364_arath : 666.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g06070.1
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.05 OrthoFinder output from all 47 species
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G77010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT2G33680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G39620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G23330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.09 OrthoFinder output from all 47 species
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G16835 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G18840 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G16860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G37570 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G40405 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g009423 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g030218 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g050950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g053713 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101053 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38141 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g22420 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05079 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06797 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g27592 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03193 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16820 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17678 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g20910 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28421 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31625 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33229 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g57040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000903 EMB2261 not classified & original description: CDS=1-2043 0.04 OrthoFinder output from all 47 species
Azfi_s0081.g038564 EMB2758 not classified & original description: CDS=1-2661 0.06 OrthoFinder output from all 47 species
Cba_g07249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g58730 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.28G015100.1 Ceric.28G015100 not classified & original description: pacid=50570923... 0.05 OrthoFinder output from all 47 species
Dac_g24604 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06339 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07748 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47902 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01012174001 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.03 OrthoFinder output from all 47 species
GSVIVT01017075001 OTP82 Pentatricopeptide repeat-containing protein At3g12770... 0.05 OrthoFinder output from all 47 species
GSVIVT01027839001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01033304001 CRR28 Pentatricopeptide repeat-containing protein At2g02980,... 0.03 OrthoFinder output from all 47 species
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
GSVIVT01033837001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01035491001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
GSVIVT01036757001 OTP84 Pentatricopeptide repeat-containing protein At1g20230... 0.04 OrthoFinder output from all 47 species
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
Gb_12372 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_18462 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_19924 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Gb_23320 CRR22 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_24823 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_32256 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.06 OrthoFinder output from all 47 species
Gb_33070 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.06 OrthoFinder output from all 47 species
Gb_33311 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 OrthoFinder output from all 47 species
Gb_36839 OTP84 Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_39298 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
LOC_Os01g27650.1 LOC_Os01g27650 Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
LOC_Os03g08680.1 LOC_Os03g08680 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Len_g01813 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21866 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54060 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g13399 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10138132g0010 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.04 OrthoFinder output from all 47 species
MA_122546g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_122899g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_136188g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_138689g0010 OTP84 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
MA_14381g0010 EMB2758 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
MA_14938g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_153011g0010 MEF1 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
MA_175688g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_211508g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
MA_25729g0010 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.06 OrthoFinder output from all 47 species
MA_41676g0020 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
MA_43615g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_53781g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_68580g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_68707g0010 No alias RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
MA_74986g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_7691g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_778985g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
MA_90090g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 OrthoFinder output from all 47 species
Ore_g43227 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g090510.2.1 Solyc01g090510 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc01g091610.1.1 Solyc01g091610 Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Solyc01g099000.1.1 Solyc01g099000 Pentatricopeptide repeat-containing protein At3g05340... 0.04 OrthoFinder output from all 47 species
Solyc02g014360.3.1 LOI1, MEF11,... RNA editing factor (MEF11) 0.04 OrthoFinder output from all 47 species
Solyc02g068630.1.1 Solyc02g068630 Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
Solyc02g076700.1.1 Solyc02g076700 Pentatricopeptide repeat-containing protein At4g02750... 0.08 OrthoFinder output from all 47 species
Solyc02g079260.2.1 Solyc02g079260 Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Solyc02g082160.2.1 CRR22, Solyc02g082160 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Solyc03g093630.3.1 CRR2, Solyc03g093630 Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Solyc03g097850.1.1 Solyc03g097850 Pentatricopeptide repeat-containing protein At5g16860... 0.04 OrthoFinder output from all 47 species
Solyc03g098420.3.1 Solyc03g098420 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc03g119120.3.1 Solyc03g119120 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Solyc04g016540.2.1 Solyc04g016540 Pentatricopeptide repeat-containing protein At2g39620... 0.05 OrthoFinder output from all 47 species
Solyc04g063300.3.1 Solyc04g063300 Pentatricopeptide repeat-containing protein At3g26540... 0.03 OrthoFinder output from all 47 species
Solyc04g076330.3.1 CRR22, Solyc04g076330 Pentatricopeptide repeat-containing protein At2g29760,... 0.06 OrthoFinder output from all 47 species
Solyc05g009400.3.1 Solyc05g009400 Pentatricopeptide repeat-containing protein At3g29230... 0.05 OrthoFinder output from all 47 species
Solyc05g012630.2.1 Solyc05g012630 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc05g023900.1.1 Solyc05g023900 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc06g064600.1.1 Solyc06g064600 Pentatricopeptide repeat-containing protein At1g56690,... 0.04 OrthoFinder output from all 47 species
Solyc06g068810.4.1 Solyc06g068810 Pentatricopeptide repeat-containing protein At5g50990... 0.04 OrthoFinder output from all 47 species
Solyc06g069700.4.1 Solyc06g069700 Pentatricopeptide repeat-containing protein At5g61400... 0.04 OrthoFinder output from all 47 species
Solyc06g082880.2.1 Solyc06g082880 RNA editing factor (MEF13) 0.05 OrthoFinder output from all 47 species
Solyc07g042760.1.1 Solyc07g042760 Pentatricopeptide repeat-containing protein At4g31070,... 0.06 OrthoFinder output from all 47 species
Solyc07g055310.1.1 Solyc07g055310 Pentatricopeptide repeat-containing protein At2g41080... 0.03 OrthoFinder output from all 47 species
Solyc08g023640.1.1 Solyc08g023640 Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
Solyc09g009950.4.1 Solyc09g009950 RNA editing factor (MEF10) 0.04 OrthoFinder output from all 47 species
Solyc09g065710.1.1 OTP86, Solyc09g065710 RNA editing factor (OTP86) 0.05 OrthoFinder output from all 47 species
Solyc10g080220.2.1 Solyc10g080220 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Solyc11g007230.1.1 Solyc11g007230 Pentatricopeptide repeat-containing protein At3g53360,... 0.04 OrthoFinder output from all 47 species
Solyc11g008970.1.1 Solyc11g008970 Pentatricopeptide repeat-containing protein At4g39952,... 0.07 OrthoFinder output from all 47 species
Solyc11g017290.1.1 Solyc11g017290 Pentatricopeptide repeat-containing protein At1g31430... 0.04 OrthoFinder output from all 47 species
Solyc11g040060.3.1 EMB2758, Solyc11g040060 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Solyc12g099620.1.1 Solyc12g099620 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species
Spa_g18513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27577 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e001918_P001 EMB2758, Zm00001e001918 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Zm00001e007600_P001 Zm00001e007600 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Zm00001e011519_P001 Zm00001e011519 Pentatricopeptide repeat-containing protein At4g21065... 0.02 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.06 OrthoFinder output from all 47 species
Zm00001e018565_P001 Zm00001e018565 Pentatricopeptide repeat-containing protein At3g13880... 0.08 OrthoFinder output from all 47 species
Zm00001e020583_P001 Zm00001e020583 Pentatricopeptide repeat-containing protein At2g33680... 0.07 OrthoFinder output from all 47 species
Zm00001e023504_P001 CRR22, Zm00001e023504 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Zm00001e025557_P001 Zm00001e025557 Pentatricopeptide repeat-containing protein At5g56310... 0.06 OrthoFinder output from all 47 species
Zm00001e030605_P001 Zm00001e030605 Pentatricopeptide repeat-containing protein At1g31430... 0.06 OrthoFinder output from all 47 species
Zm00001e033171_P001 Zm00001e033171 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
Zm00001e034478_P001 Zm00001e034478 Pentatricopeptide repeat-containing protein At3g24000,... 0.05 OrthoFinder output from all 47 species
Zm00001e041246_P001 Zm00001e041246 Pentatricopeptide repeat-containing protein At3g53360,... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 496 620
IPR002885 Pentatricopeptide_repeat 392 422
IPR002885 Pentatricopeptide_repeat 86 117
IPR002885 Pentatricopeptide_repeat 196 221
IPR002885 Pentatricopeptide_repeat 224 253
IPR002885 Pentatricopeptide_repeat 121 168
IPR002885 Pentatricopeptide_repeat 322 370
No external refs found!