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  5. LOC_Os12g10630.1

LOC_Os12g10630.1 (AtHB31, ZHD4, HB31,...)


Aliases : AtHB31, ZHD4, HB31, LOC_Os12g10630

Description : transcription factor (zf-HD)


Gene families : OG0000204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000204_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g10630.1
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00070p00154800 ATHB22, MEE68,... RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
AMTR_s00099p00145100 ZHD3, HB21,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AT1G14440 AtHB31, ZHD4, HB31 homeobox protein 31 0.03 OrthoFinder output from all 47 species
AT1G74660 MIF1 mini zinc finger 1 0.03 OrthoFinder output from all 47 species
AT1G75240 AtHB33, ZHD5, HB33 homeobox protein 33 0.03 OrthoFinder output from all 47 species
AT2G02540 ZHD3, HB21, ATHB21, ZFHD4 homeobox protein 21 0.04 OrthoFinder output from all 47 species
AT3G50890 ZHD7, HB28, AtHB28 homeobox protein 28 0.04 OrthoFinder output from all 47 species
AT5G39760 ZHD10, AtHB23, HB23 homeobox protein 23 0.02 OrthoFinder output from all 47 species
AT5G65410 ZHD1, ZFHD2, HB25, ATHB25 homeobox protein 25 0.04 OrthoFinder output from all 47 species
Als_g06227 ATHB22, MEE68, ZHD2, HB22 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10497 AtHB31, ZHD4, HB31 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20738 AtHB31, ZHD4, HB31 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene09309.t1 ATHB22, MEE68,... zf-HD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g015987 ATHB22, MEE68, ZHD2, HB22 zf-HD-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Cba_g07428 AtHB31, ZHD4, HB31 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07934 ATHB22, MEE68, ZHD2, HB22 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12329 AtHB31, ZHD4, HB31 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G025400.1 AtHB31, ZHD4,... zf-HD-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G008700.1 ATHB22, MEE68,... zf-HD-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g10912 AtHB31, ZHD4, HB31 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g13123 AtHB31, ZHD4, HB31 zf-HD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003614001 ATHB22, MEE68, ZHD2, HB22 RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
GSVIVT01011413001 HB34, ZHD9, AtHB34 RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
GSVIVT01023137001 AtHB31, ZHD4, HB31 RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Gb_30271 ATHB22, MEE68, ZHD2, HB22 transcription factor (zf-HD) 0.02 OrthoFinder output from all 47 species
LOC_Os03g50920.1 ATHB22, MEE68,... transcription factor (zf-HD) 0.03 OrthoFinder output from all 47 species
LOC_Os11g03420.1 MIF2, LOC_Os11g03420 transcription factor (zf-HD) 0.04 OrthoFinder output from all 47 species
LOC_Os12g03110.1 MIF2, LOC_Os12g03110 transcription factor (zf-HD) 0.03 OrthoFinder output from all 47 species
Len_g12417 ATHB22, MEE68, ZHD2, HB22 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g16925 ZHD3, HB21, ATHB21, ZFHD4 zf-HD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30980 ATHB22, MEE68, ZHD2, HB22 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_453742g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_9559195g0010 MIF2 transcription factor (zf-HD) 0.02 OrthoFinder output from all 47 species
Msp_g05082 ATHB22, MEE68, ZHD2, HB22 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18997 ATHB22, MEE68, ZHD2, HB22 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g102980.3.1 AtHB31, ZHD4,... transcription factor (zf-HD) 0.04 OrthoFinder output from all 47 species
Solyc01g103830.1.1 AtHB24, ZHD6,... transcription factor (zf-HD) 0.05 OrthoFinder output from all 47 species
Solyc02g085160.1.1 AtHB24, ZHD6,... transcription factor (zf-HD) 0.03 OrthoFinder output from all 47 species
Solyc04g080490.4.1 AtHB31, ZHD4,... transcription factor (zf-HD) 0.05 OrthoFinder output from all 47 species
Spa_g10265 ATHB29, ZFHD1, ZHD11 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g41230 ATHB22, MEE68, ZHD2, HB22 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g49192 AtHB31, ZHD4, HB31 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50082 AtHB31, ZHD4, HB31 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51193 AtHB31, ZHD4, HB31 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14946 ATHB22, MEE68, ZHD2, HB22 zf-HD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008082_P001 AtHB31, ZHD4,... transcription factor (zf-HD) 0.08 OrthoFinder output from all 47 species
Zm00001e009830_P001 HB34, ZHD9,... transcription factor (zf-HD) 0.07 OrthoFinder output from all 47 species
Zm00001e015590_P001 ATHB22, MEE68,... transcription factor (zf-HD) 0.05 OrthoFinder output from all 47 species
Zm00001e018364_P001 ATHB22, MEE68,... transcription factor (zf-HD) 0.08 OrthoFinder output from all 47 species
Zm00001e021292_P003 AtHB31, ZHD4,... transcription factor (zf-HD) 0.06 OrthoFinder output from all 47 species
Zm00001e022486_P001 ATHB29, ZFHD1,... transcription factor (zf-HD) 0.09 OrthoFinder output from all 47 species
Zm00001e023331_P001 ATHB22, MEE68,... transcription factor (zf-HD) 0.08 OrthoFinder output from all 47 species
Zm00001e034119_P001 ATHB29, ZFHD1,... transcription factor (zf-HD) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 72 124
No external refs found!