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  5. LOC_Os12g17480.1

LOC_Os12g17480.1 (LOC_Os12g17480)


Aliases : LOC_Os12g17480

Description : no description available(sp|q2r8l1|rga5s_orysj : 343.0)


Gene families : OG0000422 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000422_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g17480.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00205p00026120 evm_27.TU.AmTr_v1... Disease resistance protein RPM1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G10920 LOV1 NB-ARC domain-containing disease resistance protein 0.02 OrthoFinder output from all 47 species
AT3G46710 No alias NB-ARC domain-containing disease resistance protein 0.03 OrthoFinder output from all 47 species
AT5G43470 HRT, RCY1, RPP8 Disease resistance protein (CC-NBS-LRR class) family 0.02 OrthoFinder output from all 47 species
AT5G48620 No alias Disease resistance protein (CC-NBS-LRR class) family 0.02 OrthoFinder output from all 47 species
LOC_Os03g50150.1 LOC_Os03g50150 Putative late blight resistance protein homolog R1B-23... 0.02 OrthoFinder output from all 47 species
LOC_Os04g11760.1 LOC_Os04g11760 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os04g11780.1 LOC_Os04g11780 no description available(sp|f7j0n2|rga5r_orysj : 115.0) 0.05 OrthoFinder output from all 47 species
LOC_Os04g14220.2 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
LOC_Os07g12670.1 RPS2, LOC_Os07g12670 no description available(sp|f7j0n2|rga5r_orysj : 114.0) 0.02 OrthoFinder output from all 47 species
LOC_Os08g14800.1 LOC_Os08g14800 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os11g11770.1 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os11g12050.2 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os11g13440.1 LOC_Os11g13440 no description available(sp|q2r8l1|rga5s_orysj : 304.0) 0.03 OrthoFinder output from all 47 species
LOC_Os11g17330.1 LOC_Os11g17330 no description available(sp|q2r8l1|rga5s_orysj : 391.0) 0.05 OrthoFinder output from all 47 species
LOC_Os12g17410.1 RPM1, RPS3,... no description available(sp|q2r8l1|rga5s_orysj : 257.0) 0.02 OrthoFinder output from all 47 species
Solyc04g009290.1.1 RPP13, Solyc04g009290 Disease resistance protein RPP13 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e008806_P001 Zm00001e008806 no description available(sp|q2r8l1|rga5s_orysj : 238.0) 0.02 OrthoFinder output from all 47 species
Zm00001e013152_P001 Zm00001e013152 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e024479_P001 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e036637_P001 Zm00001e036637 Putative disease resistance protein At1g50180... 0.04 OrthoFinder output from all 47 species
Zm00001e039751_P001 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR041118 Rx_N 12 97
IPR002182 NB-ARC 173 390
No external refs found!