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  5. LOC_Os12g18120.1

LOC_Os12g18120.1 (LOC_Os12g18120)


Aliases : LOC_Os12g18120

Description : C3H zinc finger transcription factor


Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g18120.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AT3G06410 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.04 OrthoFinder output from all 47 species
Adi_g075179 No alias regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Adi_g075180 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ceric.34G043900.1 ZFN1, Ceric.34G043900 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Dcu_g07639 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Nbi_g05812 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ore_g03707 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ore_g44844 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Pnu_g25257 ZFN3 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Pp3c26_12400V3.1 Pp3c26_12400 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.01 OrthoFinder output from all 47 species
Ppi_g29535 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s1790.g028164 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Sam_g48703 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Solyc06g054620.4.1 Solyc06g054620 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Solyc11g008900.2.1 ZFN1, Solyc11g008900 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 240 262
IPR000571 Znf_CCCH 110 134
IPR000571 Znf_CCCH 479 504
IPR000571 Znf_CCCH 287 311
No external refs found!