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  5. LOC_Os12g42400.2

LOC_Os12g42400.2 (NF-YA10, LOC_Os12g42400)


Aliases : NF-YA10, LOC_Os12g42400

Description : component NF-YA of NF-Y transcription factor complex


Gene families : OG0000451 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000451_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g42400.2
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00174960 NF-YA10,... RNA biosynthesis.transcriptional activation.NF-Y... 0.05 OrthoFinder output from all 47 species
AMTR_s00048p00192930 NFYA5, NF-YA5,... RNA biosynthesis.transcriptional activation.NF-Y... 0.03 OrthoFinder output from all 47 species
AMTR_s00103p00144230 HAP2A, ATHAP2A,... RNA biosynthesis.transcriptional activation.NF-Y... 0.03 OrthoFinder output from all 47 species
AT1G54160 NFYA5, NF-YA5 nuclear factor Y, subunit A5 0.02 OrthoFinder output from all 47 species
Adi_g019327 NF-YA7 component *(NF-YA) of NF-Y transcription factor complex... 0.01 OrthoFinder output from all 47 species
Adi_g106281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18870 NF-YA7 component *(NF-YA) of NF-Y transcription factor complex... 0.01 OrthoFinder output from all 47 species
Aspi01Gene10718.t1 NF-YA7, Aspi01Gene10718 component *(NF-YA) of NF-Y transcription factor complex... 0.02 OrthoFinder output from all 47 species
Azfi_s0047.g030267 NF-YA7 component *(NF-YA) of NF-Y transcription factor complex... 0.03 OrthoFinder output from all 47 species
Dac_g28063 NF-YA7 component *(NF-YA) of NF-Y transcription factor complex... 0.03 OrthoFinder output from all 47 species
GSVIVT01022601001 NF-YA10 RNA biosynthesis.transcriptional activation.NF-Y... 0.03 OrthoFinder output from all 47 species
Gb_31427 NF-YA7 component NF-YA of NF-Y transcription factor complex 0.02 OrthoFinder output from all 47 species
Gb_31428 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g44540.1 NF-YA10, LOC_Os03g44540 component NF-YA of NF-Y transcription factor complex 0.01 OrthoFinder output from all 47 species
MA_17313g0010 NF-YA7 component NF-YA of NF-Y transcription factor complex 0.03 OrthoFinder output from all 47 species
MA_72133g0010 NF-YA7 component NF-YA of NF-Y transcription factor complex 0.02 OrthoFinder output from all 47 species
Msp_g27644 NF-YA7 component *(NF-YA) of NF-Y transcription factor complex... 0.02 OrthoFinder output from all 47 species
Nbi_g07832 NF-YA7 component *(NF-YA) of NF-Y transcription factor complex... 0.03 OrthoFinder output from all 47 species
Nbi_g26123 NF-YA7 component *(NF-YA) of NF-Y transcription factor complex... 0.02 OrthoFinder output from all 47 species
Ore_g10830 NF-YA7 component *(NF-YA) of NF-Y transcription factor complex... 0.02 OrthoFinder output from all 47 species
Ore_g44781 NF-YA7 component *(NF-YA) of NF-Y transcription factor complex... 0.02 OrthoFinder output from all 47 species
Pir_g22200 ATHAP2B, NF-YA2,... component *(NF-YA) of NF-Y transcription factor complex... 0.02 OrthoFinder output from all 47 species
Pnu_g27364 HAP2A, ATHAP2A,... component *(NF-YA) of NF-Y transcription factor complex... 0.03 OrthoFinder output from all 47 species
Sam_g51682 No alias component *(NF-YA) of NF-Y transcription factor complex... 0.02 OrthoFinder output from all 47 species
Solyc08g062210.3.1 NF-YA8, Solyc08g062210 component NF-YA of NF-Y transcription factor complex 0.02 OrthoFinder output from all 47 species
Solyc12g009050.3.1 NF-YA7, Solyc12g009050 component NF-YA of NF-Y transcription factor complex 0.04 OrthoFinder output from all 47 species
Zm00001e005004_P001 NF-YA10, Zm00001e005004 component NF-YA of NF-Y transcription factor complex 0.08 OrthoFinder output from all 47 species
Zm00001e005342_P003 NF-YA7, Zm00001e005342 component NF-YA of NF-Y transcription factor complex 0.04 OrthoFinder output from all 47 species
Zm00001e012396_P001 NF-YA10, Zm00001e012396 component NF-YA of NF-Y transcription factor complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001289 NFYA 152 206
No external refs found!