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  5. LOC_Os12g42420.1

LOC_Os12g42420.1 (LOC_Os12g42420)


Aliases : LOC_Os12g42420

Description : no hits & (original description: none)


Gene families : OG0000231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g42420.1

Target Alias Description ECC score Gene Family Method Actions
AT1G10880 No alias Core-2/I-branching... 0.01 OrthoFinder output from all 47 species
AT4G32290 No alias Core-2/I-branching... 0.02 OrthoFinder output from all 47 species
AT5G25330 No alias Core-2/I-branching... 0.01 OrthoFinder output from all 47 species
Ala_g25309 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g12542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene50850.t1 Aspi01Gene50850 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.18G049800.1 Ceric.18G049800 not classified & original description: pacid=50621711... 0.01 OrthoFinder output from all 47 species
Ehy_g22995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012669001 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01034592001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01037594001 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os08g01890.1 LOC_Os08g01890 no description available(sp|q65xs5|bc10_orysj : 169.0) 0.02 OrthoFinder output from all 47 species
LOC_Os10g08280.1 LOC_Os10g08280 no description available(sp|q65xs5|bc10_orysj : 134.0) 0.01 OrthoFinder output from all 47 species
MA_112910g0020 No alias no description available(sp|q65xs5|bc10_orysj : 127.0) 0.01 OrthoFinder output from all 47 species
Nbi_g08693 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g009120.3.1 Solyc05g009120 no description available(sp|q65xs5|bc10_orysj : 165.0) 0.06 OrthoFinder output from all 47 species
Zm00001e017003_P001 Zm00001e017003 no description available(sp|q65xs5|bc10_orysj : 104.0) 0.01 OrthoFinder output from all 47 species
Zm00001e019094_P001 Zm00001e019094 no description available(sp|q65xs5|bc10_orysj : 183.0) 0.01 OrthoFinder output from all 47 species
Zm00001e029160_P001 Zm00001e029160 no description available(sp|q65xs5|bc10_orysj : 176.0) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003406 Glyco_trans_14 82 331
No external refs found!