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  5. Smo103546

Smo103546


Description : Chromatin organisation.histones.H3-type histone


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo103546
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00168040 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
AT3G27360 No alias Histone superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G10400 No alias Histone superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g014654 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g01156 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g13128 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30174 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g34133 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g38980 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g43453 No alias histone *(H3) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene01978.t1 Aspi01Gene01978 histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0079.g038413 No alias histone *(H3) & original description: CDS=1-621 0.02 OrthoFinder output from all 47 species
Ceric.10G013500.1 Ceric.10G013500 histone *(H3) & original description: pacid=50612923... 0.02 OrthoFinder output from all 47 species
Ceric.19G072200.1 Ceric.19G072200 histone *(H3) & original description: pacid=50576221... 0.02 OrthoFinder output from all 47 species
Ceric.1Z177000.1 Ceric.1Z177000 histone *(H3) & original description: pacid=50628432... 0.02 OrthoFinder output from all 47 species
Ceric.27G024400.1 Ceric.27G024400 histone *(H3) & original description: pacid=50605092... 0.02 OrthoFinder output from all 47 species
Ceric.27G025100.1 Ceric.27G025100 histone *(H3) & original description: pacid=50605832... 0.02 OrthoFinder output from all 47 species
Ceric.27G029000.1 Ceric.27G029000 histone *(H3) & original description: pacid=50605580... 0.02 OrthoFinder output from all 47 species
Ceric.27G029300.1 Ceric.27G029300 histone *(H3) & original description: pacid=50605405... 0.02 OrthoFinder output from all 47 species
Ceric.37G016300.1 Ceric.37G016300 histone *(H3) & original description: pacid=50616425... 0.01 OrthoFinder output from all 47 species
Cre06.g264650 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g265250 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre06.g266650 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g267950 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g268350 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g274000 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g274101 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g274350 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g274850 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g275750 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g276600 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g276850 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre12.g504650 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre12.g504800 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre12.g505500 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre12.g506300 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre12.g506500 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre13.g569950 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre16.g649900 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre16.g650300 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g708150 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g708700 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g709050 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Dcu_g27747 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g49299 No alias histone *(H3) & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g01902 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g00352 No alias histone H3 variant *(CENH3) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01034510001 No alias Histone H3.2 OS=Pisum sativum 0.02 OrthoFinder output from all 47 species
Gb_23769 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_27618 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Gb_29026 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Gb_29027 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Gb_30564 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
LOC_Os01g64640.1 LOC_Os01g64640 histone (H3) 0.03 OrthoFinder output from all 47 species
LOC_Os03g27310.2 LOC_Os03g27310 histone (H3) 0.02 OrthoFinder output from all 47 species
LOC_Os05g36280.1 LOC_Os05g36280 histone (H3) 0.02 OrthoFinder output from all 47 species
LOC_Os11g05730.1 LOC_Os11g05730 histone (H3) 0.02 OrthoFinder output from all 47 species
Len_g04468 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g16288 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
MA_113838g0010 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
MA_17527g0010 No alias histone (H3) 0.01 OrthoFinder output from all 47 species
MA_197719g0010 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
MA_210354g0010 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
MA_24261g0010 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
MA_350032g0010 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
MA_356208g0010 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
MA_475294g0010 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
MA_561217g0010 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
MA_74555g0010 No alias Histone H3.2 OS=Pisum sativum (sp|p68427|h32_pea : 98.2) 0.03 OrthoFinder output from all 47 species
Mp3g09090.1 No alias histone (H3) 0.01 OrthoFinder output from all 47 species
Mp7g10730.1 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Mp7g16200.1 No alias histone (H3) 0.03 OrthoFinder output from all 47 species
Mp7g18030.1 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
Msp_g38566 No alias histone *(H3) & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g21341 No alias histone H3 variant *(CENH3) & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c22_8680V3.1 Pp3c22_8680 Histone superfamily protein 0.01 OrthoFinder output from all 47 species
Pp3c24_13230V3.1 Pp3c24_13230 Histone superfamily protein 0.02 OrthoFinder output from all 47 species
Sam_g22036 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g074000.3.1 Solyc01g074000 histone (H3) 0.02 OrthoFinder output from all 47 species
Solyc01g079110.4.1 Solyc01g079110 histone (H3) 0.02 OrthoFinder output from all 47 species
Solyc05g051500.4.1 Solyc05g051500 histone (H3) 0.03 OrthoFinder output from all 47 species
Solyc10g008910.1.1 Solyc10g008910 histone (H3) 0.02 OrthoFinder output from all 47 species
Solyc12g056540.1.1 Solyc12g056540 histone (H3) 0.02 OrthoFinder output from all 47 species
Spa_g14563 No alias histone H3 variant *(CENH3) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g42522 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g52464 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g03087 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04242 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e008155_P001 Zm00001e008155 histone (H3) 0.02 OrthoFinder output from all 47 species
Zm00001e014760_P001 Zm00001e014760 histone (H3) 0.02 OrthoFinder output from all 47 species
Zm00001e040856_P001 Zm00001e040856 histone (H3) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!