Aliases : PUB23
Description : E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana
Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo105050 | |
| Cluster | HCCA: Cluster_207 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Aspi01Gene54670.t1 | PUB8, B80,... | E3 ubiquitin ligase *(PUB8) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g02942 | PUB26 | U-Box-group-III E3 ubiquitin ligase & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Gb_19502 | PUB23 | U-box domain-containing protein 25 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c24_16470V3.1 | ATPUB17, PUB17,... | RING/U-box superfamily protein with ARM repeat domain | 0.01 | OrthoFinder output from all 47 species | |
| Smo403954 | PUB25 | U-box domain-containing protein 25 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0016567 | protein ubiquitination | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003613 | Ubox_domain | 10 | 79 |
| No external refs found! |
