Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo107480 | |
| Cluster | HCCA: Cluster_73 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00077p00191560 | OTP82,... | Pentatricopeptide repeat-containing protein DOT4,... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g005749 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g04279 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene10264.t1 | Aspi01Gene10264 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene34733.t1 | Aspi01Gene34733 | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene34749.t1 | Aspi01Gene34749 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0002.g001303 | No alias | not classified & original description: CDS=1-2292 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0004.g008760 | No alias | not classified & original description: CDS=1-2934 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0999.g094975 | No alias | not classified & original description: CDS=29-2698 | 0.02 | OrthoFinder output from all 47 species | |
| Len_g17726 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g38728 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g41382 | SLO1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g12671 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g27231 | No alias | cofactor of plastid-encoded RNA polymerase *(TAC9) &... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0035145 | exon-exon junction complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 156 | 179 |
| No external refs found! |
