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  5. Smo107825

Smo107825


Description : Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo107825

Target Alias Description ECC score Gene Family Method Actions
Adi_g019877 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035559 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085510 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g26256 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g43288 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g40546 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene09924.t1 REME1, Aspi01Gene09924 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene34523.t1 Aspi01Gene34523 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000999 No alias not classified & original description: CDS=128-2962 0.01 OrthoFinder output from all 47 species
Azfi_s0389.g067649 OTP84 not classified & original description: CDS=1-2388 0.01 OrthoFinder output from all 47 species
Cba_g06595 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g18331 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05108 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g36877 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os10g39460.2 LOC_Os10g39460 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g33767 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g25303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g46020 MEF22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07857 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11260 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g23882 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13321 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g52500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06693 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11012 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo125795 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.01 OrthoFinder output from all 47 species
Smo26969 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 47 species
Smo99647 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.02 OrthoFinder output from all 47 species
Spa_g20273 LPA66 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g03535 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g12143 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17737 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g45240 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e011467_P004 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 35 57
No external refs found!