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  5. Smo110409

Smo110409


Description : Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo110409

Target Alias Description ECC score Gene Family Method Actions
Ala_g16624 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61363.t1 Aspi01Gene61363 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04710 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20710 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29703 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G127400.1 VAC1, ECB2,... not classified & original description: pacid=50592739... 0.03 OrthoFinder output from all 47 species
Ceric.33G050800.1 CRR22, Ceric.33G050800 not classified & original description: pacid=50606654... 0.02 OrthoFinder output from all 47 species
Dcu_g18940 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08346 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16747 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16894 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g36299 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g42122 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g49689 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g49828 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_34736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Len_g04822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18265 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g24715 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44793 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13521 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57517 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63838 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g13845 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14049 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29898 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo136503 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Zm00001e041048_P001 OTP86, Zm00001e041048 RNA editing factor (OTP86) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0009451 RNA modification IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 169 216
No external refs found!