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  5. Smo110549

Smo110549


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo110549
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Adi_g003354 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06729 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g34817 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35869 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36540 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07268 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18410 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g40180 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g60846 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62639 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37094 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37584 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g40212 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g68065 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00343.t1 Aspi01Gene00343 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01267.t1 CRR2, Aspi01Gene01267 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02394.t1 Aspi01Gene02394 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20358.t1 Aspi01Gene20358 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene42015.t1 Aspi01Gene42015 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007681 No alias not classified & original description: CDS=1-3132 0.05 OrthoFinder output from all 47 species
Azfi_s0004.g008781 No alias not classified & original description: CDS=1-2346 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009381 No alias not classified & original description: CDS=1-2946 0.02 OrthoFinder output from all 47 species
Azfi_s0033.g025098 No alias not classified & original description: CDS=1-4389 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030882 CRR22 not classified & original description: CDS=1-1611 0.03 OrthoFinder output from all 47 species
Azfi_s0113.g045914 No alias not classified & original description: CDS=1-2748 0.03 OrthoFinder output from all 47 species
Azfi_s0113.g045915 CRR22 not classified & original description: CDS=197-1879 0.03 OrthoFinder output from all 47 species
Azfi_s0130.g049076 No alias not classified & original description: CDS=1-1890 0.02 OrthoFinder output from all 47 species
Azfi_s0139.g051178 No alias not classified & original description: CDS=1-2667 0.03 OrthoFinder output from all 47 species
Azfi_s0173.g055844 CRR22 not classified & original description: CDS=1-1863 0.02 OrthoFinder output from all 47 species
Azfi_s0194.g057202 No alias not classified & original description: CDS=1-2553 0.03 OrthoFinder output from all 47 species
Azfi_s0232.g059292 No alias not classified & original description: CDS=1-1740 0.05 OrthoFinder output from all 47 species
Azfi_s0336.g065543 CRR22 not classified & original description: CDS=1-1749 0.05 OrthoFinder output from all 47 species
Azfi_s0405.g068372 No alias not classified & original description: CDS=1-2844 0.03 OrthoFinder output from all 47 species
Azfi_s0408.g068443 No alias not classified & original description: CDS=1-2298 0.03 OrthoFinder output from all 47 species
Azfi_s0444.g070599 No alias not classified & original description: CDS=1-3282 0.03 OrthoFinder output from all 47 species
Azfi_s0471.g072918 No alias not classified & original description: CDS=1-3447 0.03 OrthoFinder output from all 47 species
Azfi_s1596.g104539 No alias not classified & original description: CDS=111-3779 0.03 OrthoFinder output from all 47 species
Cba_g07727 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20760 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g37893 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G030500.1 Ceric.21G030500 not classified & original description: pacid=50603713... 0.04 OrthoFinder output from all 47 species
Ceric.21G046100.1 Ceric.21G046100 not classified & original description: pacid=50602747... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g09323 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08714 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08946 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g45907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23363 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14560 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26370 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_07336 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
LOC_Os01g72930.1 LOC_Os01g72930 Pentatricopeptide repeat-containing protein At3g13880... 0.02 OrthoFinder output from all 47 species
LOC_Os03g20190.1 LOC_Os03g20190 Pentatricopeptide repeat-containing protein At1g56690,... 0.02 OrthoFinder output from all 47 species
Len_g05370 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18932 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g36343 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g40700 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g55833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12137 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38058 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_38266g0010 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.02 OrthoFinder output from all 47 species
Msp_g13483 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g15230 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28018 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41731 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13480 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g46816 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g19854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22825 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53029 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53705 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57552 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002155 CRR22 not classified & original description: CDS=84-2588 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011851 OTP84 not classified & original description: CDS=1-2175 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020410 No alias not classified & original description: CDS=1-2748 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0153.g023530 CRR22 not classified & original description: CDS=1-2073 0.03 OrthoFinder output from all 47 species
Smo81513 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Smo93575 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Smo97343 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Smo98388 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc03g051780.3.1 Solyc03g051780 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc03g116840.3.1 Solyc03g116840 RNA editing factor (OTP81) 0.06 OrthoFinder output from all 47 species
Solyc07g005170.3.1 Solyc07g005170 Pentatricopeptide repeat-containing protein At1g09410,... 0.03 OrthoFinder output from all 47 species
Solyc11g071370.1.1 PDE247, CLB19,... RNA editing factor (CLB19) 0.02 OrthoFinder output from all 47 species
Spa_g20286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12995 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g46155 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 163 188
No external refs found!