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  5. Smo111982

Smo111982


Description : Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo111982

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00145640 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
AMTR_s00049p00220350 OTP85,... Pentatricopeptide repeat-containing protein At2g02980,... 0.03 OrthoFinder output from all 47 species
AMTR_s00067p00084570 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.04 OrthoFinder output from all 47 species
AT3G47840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06320 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32888 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04109 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g15138 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24711 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05250 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g38918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g40212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01654.t1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12038.t1 Aspi01Gene12038 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20496.t1 CRR22, Aspi01Gene20496 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20498.t1 CRR2, Aspi01Gene20498 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34532.t1 Aspi01Gene34532 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34780.t1 Aspi01Gene34780 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35417.t1 OTP82, Aspi01Gene35417 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene64067.t1 MEF19, Aspi01Gene64067 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0020.g015570 OTP86 not classified & original description: CDS=1-2442 0.03 OrthoFinder output from all 47 species
Azfi_s0052.g031587 No alias not classified & original description: CDS=171-3077 0.03 OrthoFinder output from all 47 species
Cba_g18582 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g25304 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g32572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G019500.1 Ceric.04G019500 not classified & original description: pacid=50631611... 0.04 OrthoFinder output from all 47 species
Ceric.04G068200.1 OTP86, Ceric.04G068200 not classified & original description: pacid=50632337... 0.04 OrthoFinder output from all 47 species
Ceric.29G017900.1 Ceric.29G017900 not classified & original description: pacid=50624370... 0.03 OrthoFinder output from all 47 species
Ceric.32G057100.1 Ceric.32G057100 not classified & original description: pacid=50598475... 0.02 OrthoFinder output from all 47 species
Dac_g07318 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g13535 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g32864 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07698 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08616 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45923 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46551 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g09988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000072001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.03 OrthoFinder output from all 47 species
GSVIVT01017378001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
GSVIVT01027525001 LPA66 Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
LOC_Os04g14130.1 LOC_Os04g14130 Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
LOC_Os09g24680.1 LOC_Os09g24680 Pentatricopeptide repeat-containing protein At1g74600,... 0.04 OrthoFinder output from all 47 species
Len_g04775 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g08191 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18273 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18599 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18788 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26572 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g37787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g38570 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44130 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06546 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06624 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_124868g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_184088g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 OrthoFinder output from all 47 species
MA_210823g0010 EMB2261 Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Msp_g04292 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g05274 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g11358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g38648 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g40735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30693 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c6_28980V3.1 Pp3c6_28980 organellar single-stranded DNA binding protein 3 0.02 OrthoFinder output from all 47 species
Ppi_g09062 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0193.g025370 No alias not classified & original description: CDS=1-2208 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0233.g026492 No alias not classified & original description: CDS=48-2072 0.04 OrthoFinder output from all 47 species
Sam_g16371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g33092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
Smo118770 No alias Pentatricopeptide repeat-containing protein At4g14050,... 0.04 OrthoFinder output from all 47 species
Smo34484 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 OrthoFinder output from all 47 species
Smo442088 CRR22 Pentatricopeptide repeat-containing protein At2g33760... 0.03 OrthoFinder output from all 47 species
Smo56766 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.04 OrthoFinder output from all 47 species
Smo70138 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Smo76236 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.05 OrthoFinder output from all 47 species
Smo83339 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Smo92008 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Smo97289 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc09g090440.1.1 LPA66, Solyc09g090440 Pentatricopeptide repeat-containing protein At5g66520... 0.04 OrthoFinder output from all 47 species
Spa_g09530 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06393 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07829 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14912 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003605_P001 DOT4, Zm00001e003605 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 198 246
No external refs found!