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  5. Smo115495

Smo115495


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS20 component


Gene families : OG0001982 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001982_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo115495
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00105050 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
AT3G45030 No alias Ribosomal protein S10p/S20e family protein 0.18 OrthoFinder output from all 47 species
AT3G47370 No alias Ribosomal protein S10p/S20e family protein 0.18 OrthoFinder output from all 47 species
AT5G62300 No alias Ribosomal protein S10p/S20e family protein 0.16 OrthoFinder output from all 47 species
Ala_g32242 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Ala_g39099 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Als_g08426 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Als_g22907 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aob_g00267 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aop_g23202 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Azfi_s0104.g044711 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Cba_g46461 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Cba_g49563 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.10G040000.1 Ceric.10G040000 component *(uS10) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Ceric.35G056300.1 Ceric.35G056300 component *(uS10) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.28 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder output from all 47 species
Cre16.g660150 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 OrthoFinder output from all 47 species
Dac_g24720 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g24923 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Dde_g22072 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g10630 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01018553001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder output from all 47 species
Gb_35970 No alias component RPS20 of SSU proteome 0.02 OrthoFinder output from all 47 species
LOC_Os03g14530.1 LOC_Os03g14530 component RPS20 of SSU proteome 0.1 OrthoFinder output from all 47 species
LOC_Os06g04290.1 LOC_Os06g04290 component RPS20 of SSU proteome 0.1 OrthoFinder output from all 47 species
LOC_Os10g08930.1 LOC_Os10g08930 component RPS20 of SSU proteome 0.11 OrthoFinder output from all 47 species
Len_g05031 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Len_g44279 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g04390 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g05114 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_103406g0010 No alias component RPS20 of SSU proteome 0.15 OrthoFinder output from all 47 species
MA_10429759g0010 No alias component RPS20 of SSU proteome 0.18 OrthoFinder output from all 47 species
Mp2g09440.1 No alias component RPS20 of SSU proteome 0.21 OrthoFinder output from all 47 species
Msp_g18247 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Msp_g24560 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Msp_g24561 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Pir_g63796 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Pp3c1_21860V3.1 Pp3c1_21860 Ribosomal protein S10p/S20e family protein 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015887 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g14098 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g23471 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Solyc01g096580.3.1 Solyc01g096580 component RPS20 of SSU proteome 0.17 OrthoFinder output from all 47 species
Solyc01g096590.3.1 Solyc01g096590 component RPS20 of SSU proteome 0.07 OrthoFinder output from all 47 species
Spa_g27726 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Spa_g35271 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Tin_g26346 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Zm00001e001045_P001 Zm00001e001045 component RPS20 of SSU proteome 0.1 OrthoFinder output from all 47 species
Zm00001e036579_P001 Zm00001e036579 component RPS20 of SSU proteome 0.12 OrthoFinder output from all 47 species
Zm00001e038574_P001 Zm00001e038574 component RPS20 of SSU proteome 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0034998 oligosaccharyltransferase I complex IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 18 112
No external refs found!