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  5. Smo117217

Smo117217 (ARF6)


Aliases : ARF6

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo117217

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00267580 ARF19, IAA22,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AMTR_s00057p00141830 HSS, ARF1-BP,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AT5G62000 HSS, ARF1-BP, ARF2, ORE14 auxin response factor 2 0.03 OrthoFinder output from all 47 species
Ala_g06926 ARF1 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33345 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07961 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g12632 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene24129.t1 ARF19, IAA22,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.01 OrthoFinder output from all 47 species
Dac_g20944 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17078 ARF16 ARF-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g46643 HSS, ARF1-BP, ARF2, ORE14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08602 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12286 ARF10 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015035001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.01 OrthoFinder output from all 47 species
Gb_02925 ARF19, IAA22, ARF11 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Gb_15247 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Ore_g10460 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29226 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19396 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19455 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16707 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013444 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Zm00001e030325_P003 ARF6, Zm00001e030325 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 130 231
No external refs found!