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  5. Smo134538

Smo134538


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo134538

Target Alias Description ECC score Gene Family Method Actions
AT4G01030 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g035616 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066095 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086048 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05250 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16161 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01610.t1 CRR22, Aspi01Gene01610 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04901.t1 Aspi01Gene04901 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24967.t1 Aspi01Gene24967 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72589.t1 MEF22, Aspi01Gene72589 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000730 No alias not classified & original description: CDS=1-2529 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008858 No alias not classified & original description: CDS=1-2760 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g009689 No alias not classified & original description: CDS=1-2529 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011342 No alias not classified & original description: CDS=1-1953 0.02 OrthoFinder output from all 47 species
Azfi_s0008.g011649 No alias not classified & original description: CDS=1-3195 0.02 OrthoFinder output from all 47 species
Azfi_s0009.g011901 No alias not classified & original description: CDS=1-1638 0.02 OrthoFinder output from all 47 species
Azfi_s0022.g016133 No alias ssDNA-binding protein *(OSB) & original description: CDS=1-2574 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037861 No alias not classified & original description: CDS=1-1125 0.03 OrthoFinder output from all 47 species
Azfi_s0093.g043166 No alias not classified & original description: CDS=1-1980 0.03 OrthoFinder output from all 47 species
Azfi_s0143.g051490 No alias not classified & original description: CDS=1-2688 0.03 OrthoFinder output from all 47 species
Azfi_s0215.g058372 No alias not classified & original description: CDS=1-2739 0.03 OrthoFinder output from all 47 species
Azfi_s0277.g061496 No alias not classified & original description: CDS=1-2121 0.02 OrthoFinder output from all 47 species
Azfi_s0345.g065835 No alias not classified & original description: CDS=1-1926 0.03 OrthoFinder output from all 47 species
Azfi_s0485.g073410 No alias not classified & original description: CDS=1-1641 0.04 OrthoFinder output from all 47 species
Cba_g20250 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35045 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g45006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67808 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67910 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G042700.1 Ceric.02G042700 not classified & original description: pacid=50584264... 0.03 OrthoFinder output from all 47 species
Ceric.27G067100.1 CRR22, Ceric.27G067100 not classified & original description: pacid=50605115... 0.02 OrthoFinder output from all 47 species
Dac_g04694 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g17077 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21258 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g27302 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g30289 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g31882 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35870 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g43262 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g43925 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_33335 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
LOC_Os03g52475.1 LOC_Os03g52475 Pentatricopeptide repeat-containing protein At3g28660... 0.03 OrthoFinder output from all 47 species
Len_g02911 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g56497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10311934g0010 MEF22 Pentatricopeptide repeat-containing protein At1g15510,... 0.02 OrthoFinder output from all 47 species
MA_10721g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.02 OrthoFinder output from all 47 species
Msp_g05630 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g06342 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g38728 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g46039 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06724 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57986 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63501 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63504 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62422 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000505 CRR2 not classified & original description: CDS=1-1110 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005946 No alias not classified & original description: CDS=1-1029 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006276 No alias not classified & original description: CDS=1-1806 0.03 OrthoFinder output from all 47 species
Sam_g13791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40435 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo26969 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Tin_g08679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24942 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001038_P001 CRR2, Zm00001e001038 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.02 OrthoFinder output from all 47 species
Zm00001e034478_P001 Zm00001e034478 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
Zm00001e039394_P003 Zm00001e039394 Pentatricopeptide repeat-containing protein At5g04780,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 74 121
No external refs found!