Aliases : RPL16
Description : 50S ribosomal protein L16, chloroplastic OS=Huperzia lucidula
Gene families : OG0004825 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004825_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo137887 | |
| Cluster | HCCA: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| ATCG00790 | RPL16 | ribosomal protein L16 | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.05G042300.1 | RPL16, Ceric.05G042300 | component *(uL16c) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.05G052200.1 | RPL16, Ceric.05G052200 | not classified & original description: pacid=50577977... | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.1Z020000.1 | RPL16, Ceric.1Z020000 | not classified & original description: pacid=50586397... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.29G004300.1 | RPL16, Ceric.29G004300 | not classified & original description: pacid=50624823... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.38G009100.1 | RPL16, Ceric.38G009100 | component *(uL16c) of large plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os01g57958.1 | LOC_Os01g57958 | 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... | 0.11 | OrthoFinder output from all 47 species | |
| LOC_Os04g16826.1 | LOC_Os04g16826 | 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... | 0.11 | OrthoFinder output from all 47 species | |
| LOC_Os10g21344.1 | LOC_Os10g21344 | 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... | 0.11 | OrthoFinder output from all 47 species | |
| Mp1g22400.1 | No alias | 60S ribosomal protein L16, mitochondrial OS=Marchantia... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s3366.g028729 | RPL16 | component *(uL16c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s3471.g028812 | RPL16 | component *(uL16c) of large plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc00g500245.1.1 | Solyc00g500245 | component mtRPL16 of large ribosomal subunit proteome.... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc05g045840.1.1 | RPL16, Solyc05g045840 | 60S ribosomal protein L16, mitochondrial OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005622 | intracellular anatomical structure | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0031361 | obsolete integral component of thylakoid membrane | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR016180 | Ribosomal_L10e/L16 | 1 | 128 |
| No external refs found! |
