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  5. Smo139408

Smo139408 (PGP20)


Aliases : PGP20

Description : Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo139408
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00145p00075460 PGP20,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AT2G36910 PGP1, ABCB1, ATPGP1 ATP binding cassette subfamily B1 0.02 OrthoFinder output from all 47 species
AT2G39480 PGP6 P-glycoprotein 6 0.07 OrthoFinder output from all 47 species
AT3G55320 PGP20 P-glycoprotein 20 0.01 OrthoFinder output from all 47 species
Adi_g019429 PGP20 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18719 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g03780 PGP20 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g02407 PGP20 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20592.t1 PGP6, Aspi01Gene20592 subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.10G028600.1 PGP20, Ceric.10G028600 subfamily ABCB transporter & original description:... 0.05 OrthoFinder output from all 47 species
Ehy_g21294 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016617001 PGP20 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
GSVIVT01025040001 PGP20 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Gb_20009 PGP6 subfamily ABCB transporter 0.05 OrthoFinder output from all 47 species
Gb_31652 PGP6 subfamily ABCB transporter 0.07 OrthoFinder output from all 47 species
LOC_Os01g74470.1 PGP20, LOC_Os01g74470 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
LOC_Os03g17180.1 PGP20, LOC_Os03g17180 subfamily ABCB transporter 0.05 OrthoFinder output from all 47 species
Len_g12068 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47394 PGP2 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
MA_14136g0010 PGP20 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
MA_40328g0010 PGP20 ABC transporter B family member 20 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g19754 ABCB19,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04820 PGP20 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01067 PGP6 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g30508 PGP5 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006153 PGP11 subfamily ABCB transporter & original description: CDS=261-4235 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006646 PGP20 subfamily ABCB transporter & original description: CDS=24-3872 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017905 PGP11 not classified & original description: CDS=139-861 0.04 OrthoFinder output from all 47 species
Solyc04g010310.4.1 PGP20, Solyc04g010310 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Spa_g48523 PGP13 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001258_P003 PGP20, Zm00001e001258 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Zm00001e018488_P001 PGP20, Zm00001e018488 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1136 1284
No external refs found!