Smo142751

Description : DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica

Gene families : OG0004236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004236_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo142751

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00149950	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Cre10.g436650	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
GSVIVT01017719001	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Gb_19265	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
LOC_Os03g01830.1	LOC_Os03g01830	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
Lfl_g37545	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Mp8g11020.1	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Pnu_g33516	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005945	No alias	not classified & original description: CDS=228-2279	0.06	OrthoFinder output from all 47 species
Sam_g16562	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g15666	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e039095_P002	Zm00001e039095	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	265	382

External Links

No external refs found!