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  5. Smo146079

Smo146079


Description : Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3l component


Gene families : OG0004705 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004705_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Smo146079

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00071210 evm_27.TU.AmTr_v1... Protein biosynthesis.translation... 0.05 OrthoFinder output from all 47 species
Ala_g15257 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Aop_g00719 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene21773.t1 Aspi01Gene21773 component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.06 OrthoFinder output from all 47 species
Azfi_s0033.g024996 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.05 OrthoFinder output from all 47 species
Ceric.03G028800.1 Ceric.03G028800 component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.15 No alias Protein biosynthesis.translation... 0.03 OrthoFinder output from all 47 species
Cre17.g697450 No alias Protein biosynthesis.translation... 0.05 OrthoFinder output from all 47 species
Dac_g02249 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g05568 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.06 OrthoFinder output from all 47 species
GSVIVT01035660001 No alias Protein biosynthesis.translation... 0.03 OrthoFinder output from all 47 species
Gb_07559 No alias component eIF3l of eIF3 mRNA-to-PIC binding complex 0.03 OrthoFinder output from all 47 species
LOC_Os05g13950.1 LOC_Os05g13950 component eIF3l of eIF3 mRNA-to-PIC binding complex 0.1 OrthoFinder output from all 47 species
Lfl_g06571 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
MA_4833g0010 No alias component eIF3l of eIF3 mRNA-to-PIC binding complex 0.04 OrthoFinder output from all 47 species
MA_4833g0020 No alias component eIF3l of eIF3 mRNA-to-PIC binding complex 0.03 OrthoFinder output from all 47 species
MA_525836g0010 No alias component eIF3l of eIF3 mRNA-to-PIC binding complex 0.02 OrthoFinder output from all 47 species
Mp3g02920.1 No alias component eIF3l of eIF3 mRNA-to-PIC binding complex 0.06 OrthoFinder output from all 47 species
Nbi_g07862 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Ore_g09994 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Pp3s48_70V3.1 Pp3s48_70 RNA polymerase I-associated factor PAF67 0.01 OrthoFinder output from all 47 species
Sam_g26742 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Solyc08g068340.3.1 Solyc08g068340 component eIF3l of eIF3 mRNA-to-PIC binding complex 0.1 OrthoFinder output from all 47 species
Spa_g01339 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Spa_g43394 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e016402_P001 Zm00001e016402 component eIF3l of eIF3 mRNA-to-PIC binding complex 0.1 OrthoFinder output from all 47 species
Zm00001e026109_P001 Zm00001e026109 component eIF3l of eIF3 mRNA-to-PIC binding complex 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004055 argininosuccinate synthase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019382 eIF3l 112 518
No external refs found!