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  5. Smo165098

Smo165098


Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo165098
Cluster HCCA: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00264370 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.01 OrthoFinder output from all 47 species
Aev_g20723 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Als_g11060 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g21821 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03729 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g11546 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g20667 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11729 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g14896 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25225 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g38152 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47291 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g48343 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03562 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05158 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06587 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12470 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12472 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13030 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g14386 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g17111 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01015852001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
Gb_01460 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
LOC_Os09g39760.1 LOC_Os09g39760 pectin methylesterase 0.06 OrthoFinder output from all 47 species
Len_g15122 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Len_g46556 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
MA_16389g0020 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Mp2g19430.1 No alias pectin methylesterase 0.06 OrthoFinder output from all 47 species
Mp3g01170.1 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Mp5g03920.1 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Mp5g03930.1 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Msp_g42451 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g06428 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20425 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27386 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29702 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30829 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01944 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010091 No alias pectin methylesterase & original description: CDS=1-882 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015880 No alias pectin methylesterase & original description: CDS=354-1487 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025813 No alias pectin methylesterase & original description: CDS=1-1236 0.01 OrthoFinder output from all 47 species
Sam_g16125 No alias EC_3.1 hydrolase acting on ester bond & original... 0.01 OrthoFinder output from all 47 species
Spa_g29457 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g07049 No alias pecTin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20547 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027944_P002 ATPE11, PE11,... pectin methylesterase 0.01 OrthoFinder output from all 47 species
Zm00001e033546_P001 Zm00001e033546 pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 61 352
No external refs found!