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  5. Smo165708

Smo165708


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL23 component


Gene families : OG0001634 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001634_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo165708
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00206470 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
AT1G04480 No alias Ribosomal protein L14p/L23e family protein 0.15 OrthoFinder output from all 47 species
AT2G33370 No alias Ribosomal protein L14p/L23e family protein 0.14 OrthoFinder output from all 47 species
AT3G04400 emb2171 Ribosomal protein L14p/L23e family protein 0.19 OrthoFinder output from all 47 species
Adi_g048509 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g082409 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ala_g22432 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Als_g07889 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Als_g31467 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g39430 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aob_g05420 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g04807 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Aop_g30194 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0018.g014977 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Azfi_s0509.g074710 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ceric.06G080100.1 Ceric.06G080100 component *(uL14) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Ceric.14G092400.1 Ceric.14G092400 component *(uL14) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021290.9 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Cre04.g211800 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Dac_g25948 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dac_g34723 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g12677 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g45777 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dde_g03654 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g04126 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01027905001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
GSVIVT01028407001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Gb_21541 No alias component RPL23 of LSU proteome component 0.1 OrthoFinder output from all 47 species
LOC_Os02g56960.1 LOC_Os02g56960 component RPL23 of LSU proteome component 0.13 OrthoFinder output from all 47 species
LOC_Os03g04590.1 LOC_Os03g04590 component RPL23 of LSU proteome component 0.11 OrthoFinder output from all 47 species
LOC_Os10g32920.1 LOC_Os10g32920 component RPL23 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Len_g04549 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Len_g18420 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Len_g49503 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Len_g49504 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g31545 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g38549 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_10432200g0010 No alias component RPL23 of LSU proteome component 0.14 OrthoFinder output from all 47 species
MA_950121g0010 No alias component RPL23 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Mp6g14310.1 No alias component RPL23 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Msp_g22572 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Nbi_g20041 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g37801 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g06386 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c27_860V3.1 Pp3c27_860 Ribosomal protein L14p/L23e family protein 0.06 OrthoFinder output from all 47 species
Ppi_g11756 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015442 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016759 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g11546 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g47118 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Solyc06g008170.3.1 Solyc06g008170 component RPL23 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Solyc06g083780.3.1 Solyc06g083780 component RPL23 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Solyc09g072865.1.1 Solyc09g072865 component RPL23 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Solyc09g090610.3.1 Solyc09g090610 component RPL23 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Spa_g08149 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g17111 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Spa_g21229 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g52019 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g03689 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Tin_g26632 No alias component *(uL14) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Zm00001e000323_P001 Zm00001e000323 component RPL23 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Zm00001e012721_P001 Zm00001e012721 component RPL23 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Zm00001e023614_P001 Zm00001e023614 component RPL23 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Zm00001e038953_P001 Zm00001e038953 component RPL23 of LSU proteome component 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR000218 Ribosomal_L14P 22 140
No external refs found!