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  5. Smo168492

Smo168492


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.type-1A topoisomerase TOP3b


Gene families : OG0002141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo168492

Target Alias Description ECC score Gene Family Method Actions
AT2G32000 No alias DNA topoisomerase, type IA, core 0.04 OrthoFinder output from all 47 species
Aev_g23923 No alias type-1A topoisomerase TOP3b & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.17G059000.1 Ceric.17G059000 type-1A topoisomerase TOP3b & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001466.15 AtTOP3alpha, TOP3A DNA topoisomerase 3-alpha OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Dcu_g12778 No alias type-1A topoisomerase TOP3b & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01588 No alias type-1A topoisomerase TOP3b & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031636001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Lfl_g10610 No alias type-1A topoisomerase TOP3b & original description: none 0.04 OrthoFinder output from all 47 species
MA_10428900g0010 No alias topoisomerase component TOP3b of TDRD3-TOP3B... 0.02 OrthoFinder output from all 47 species
Ppi_g61417 AtTOP3alpha, TOP3A topoisomerase component *(TOP3-alpha) of RTR Holliday... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
MF GO:0008658 penicillin binding IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0033218 amide binding IEP HCCA
MF GO:0033293 monocarboxylic acid binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013497 Topo_IA_cen 149 559
No external refs found!