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  5. Smo173081

Smo173081 (CDC48B)


Aliases : CDC48B

Description : Cell division control protein 48 homolog B OS=Arabidopsis thaliana


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo173081
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00198390 CIP111,... Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00049p00071550 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.04 OrthoFinder output from all 47 species
AMTR_s00095p00091200 CIP111,... Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G01610 emb1354, CDC48C cell division cycle 48C 0.04 OrthoFinder output from all 47 species
AT3G56690 CIP111 Cam interacting protein 111 0.03 OrthoFinder output from all 47 species
Adi_g035605 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g054679 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20068 CIP111 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14618 No alias platform ATPase CDC48 & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g05302 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000525.10 emb1354, CDC48C Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species
Dcu_g04096 CIP111 platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02340 No alias platform ATPase CDC48 & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g09970 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g01980.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.04 OrthoFinder output from all 47 species
LOC_Os11g11340.1 CIP111, LOC_Os11g11340 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp1g02450.1 No alias platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Pir_g01985 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003606 CDC48B not classified & original description: CDS=1-618 0.05 OrthoFinder output from all 47 species
Sam_g25222 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g012190.3.1 CDC48B, Solyc05g012190 Cell division control protein 48 homolog B... 0.03 OrthoFinder output from all 47 species
Solyc10g078320.2.1 CIP111, Solyc10g078320 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e036688_P001 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!