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  5. Smo173767

Smo173767


Description : Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana


Gene families : OG0002960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002960_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo173767

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00122030 evm_27.TU.AmTr_v1... Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT2G25320 No alias TRAF-like family protein 0.06 OrthoFinder output from all 47 species
Adi_g078535 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098468 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35642 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g22455 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16408 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene31458.t1 Aspi01Gene31458 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0042.g026935 No alias not classified & original description: CDS=339-5477 0.03 OrthoFinder output from all 47 species
Ceric.02G028800.1 Ceric.02G028800 not classified & original description: pacid=50585664... 0.09 OrthoFinder output from all 47 species
Ceric.07G070900.1 Ceric.07G070900 not classified & original description: pacid=50626059... 0.06 OrthoFinder output from all 47 species
Dcu_g12067 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01035878001 No alias Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
LOC_Os02g39990.1 LOC_Os02g39990 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g12534 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430470g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10434824g0010 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_24634g0010 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_9624g0010 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Mp8g09710.1 No alias MATH domain and coiled-coil domain-containing protein... 0.03 OrthoFinder output from all 47 species
Ore_g29897 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0159.g023847 No alias not classified & original description: CDS=1-5244 0.02 OrthoFinder output from all 47 species
Solyc06g017970.4.1 Solyc06g017970 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Zm00001e022965_P001 Zm00001e022965 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 388 495
No external refs found!